Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_L03
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 156 3e-38
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369... 106 3e-23
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818... 36 0.034
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436... 36 0.045
07_01_0974 + 8211602-8212051 30 2.2
04_04_1601 + 34707975-34708209,34708598-34709970 29 3.9
05_01_0030 + 195663-196691 29 6.8
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 29 6.8
10_01_0197 + 2148109-2149551 28 9.0
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 156 bits (378), Expect = 3e-38
Identities = 74/150 (49%), Positives = 105/150 (70%), Gaps = 4/150 (2%)
Frame = +1
Query: 352 AFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGT 528
A+ + H+MV P ++ P+A AG + +TFHIE +D E+ + ++ GM+ GV+++PGT
Sbjct: 65 AYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGT 124
Query: 529 PVSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGP 699
PV EV + ++VL+MTVEPGFGGQKFM M KV+ LR+ YP LDIEVDGG+GP
Sbjct: 125 PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP 184
Query: 700 STINCCANAGANMIVSGTAIIGSADQAATI 789
STI+ A+AGAN IV+G++I G+A+ I
Sbjct: 185 STIDVAASAGANCIVAGSSIFGAAEPGEVI 214
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +3
Query: 174 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHP 317
A I PS+L++D + L E+ +++ GAD+LH+D+MDG FVPNLT G P
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAP 54
>03_01_0485 +
3695857-3695951,3696489-3696597,3696746-3696886,
3696986-3697099,3697558-3697636,3698163-3698272,
3698344-3698400,3698520-3698609
Length = 264
Score = 106 bits (254), Expect = 3e-23
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Frame = +1
Query: 343 IKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVREHGMKVGVAI 516
+ D + H+M+ +PEQ + AG + + H E + +++ G K GV +
Sbjct: 106 VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVL 165
Query: 517 KPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR----ENYPLLDIEVD 684
P TP++ ++ + + D+VLIM+V PGFGGQ F+E+Q+ K+ LR E IEVD
Sbjct: 166 NPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVD 225
Query: 685 GGVGPSTINCCANAGANMIVSGTAIIGSADQA 780
GGVGP AGAN IV+G+A+ G+ D A
Sbjct: 226 GGVGPKNAYKVIEAGANAIVAGSAVFGAPDYA 257
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/64 (40%), Positives = 41/64 (64%)
Frame = +3
Query: 120 KFFRRKIRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPN 299
K FR + S+ ++ PSIL+A+ S+L E+ + + G D++H+DVMDG+FVPN
Sbjct: 33 KAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPN 92
Query: 300 LTFG 311
+T G
Sbjct: 93 ITIG 96
>03_06_0302 -
32981404-32981538,32981619-32981678,32981800-32981877,
32982264-32982341,32982516-32982592,32983271-32983445,
32983532-32983678,32984407-32984496
Length = 279
Score = 36.3 bits (80), Expect = 0.034
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +1
Query: 415 AGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEP 594
AGV+ P+++ + + HG+++ + P TP +++ S+ + +
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193
Query: 595 GFGGQKFMENQMAKVQY-LRENYPLLDIEVDGGVGPST---INCCANAGANMIVSGTAII 762
G G + N +V+Y L+E + D V G G ST + A GA+ ++ G+AI+
Sbjct: 194 GVTGAR--SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIV 251
Query: 763 GSADQAAT 786
+AA+
Sbjct: 252 RQLGEAAS 259
>07_01_0587 -
4362843-4362977,4363072-4363131,4363228-4363305,
4363552-4363629,4363950-4364026,4364416-4364590,
4364698-4364844,4365477-4365716
Length = 329
Score = 35.9 bits (79), Expect = 0.045
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Frame = +1
Query: 394 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 573
++T + +AGV+ P+++ + + ++ +++ + P TP +EK S+
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236
Query: 574 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST---INCCANAGANMI 741
+ + G G + N KVQ L ++ + D V G G ST + A GA+ +
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGV 294
Query: 742 VSGTAIIGSADQAAT 786
+ G+A++ +AA+
Sbjct: 295 IIGSAMVRQLGEAAS 309
>07_01_0974 + 8211602-8212051
Length = 149
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 788 IVAAWSADPIMAVPETIMLAPALAQQFIVDGPTPPSTSISSNG 660
+ AA A ++ P P L QQF P PPS+ + G
Sbjct: 18 VAAAIVAGLLLLAPAAAQQPPPLVQQFYYYSPPPPSSPVGGGG 60
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 601 GGQKFMENQMA-KVQYLRENYPLLDIEVDGGVGPSTINCCANAGANMIVSGTAIIGSADQ 777
GG + + + + K +Y+R + L D + DGG G + G+ V ++ S +
Sbjct: 14 GGMRSLPDFLGRKSKYVRMDDVLPDEQGDGGGGGGVVRVRGGGGSGRYVFACSVFASLNH 73
Query: 778 AATIKFYEVLSGCI 819
V+SGCI
Sbjct: 74 VLLGYDVGVMSGCI 87
>05_01_0030 + 195663-196691
Length = 342
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 602 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 441
P P S + ++ + I ++ VP F+A T SLT L S SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/77 (20%), Positives = 37/77 (48%)
Frame = +1
Query: 532 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTIN 711
+ E ++++ +L V GF G + N++ ++ L + LLD E+D G+ +
Sbjct: 188 IEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLD-EIDSGLDVDALE 246
Query: 712 CCANAGANMIVSGTAII 762
A A ++ ++++
Sbjct: 247 YVAKAVNGILTPNSSLM 263
>10_01_0197 + 2148109-2149551
Length = 480
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 699 INNKLLCQCRSQHDSLRDSHNWISRPSCYYKILR----STVRMHNNIYSDTPXCQLVMS 863
I N +LC+ R + S N IS P+CY R ST+R H+ + S + ++S
Sbjct: 82 IKNSILCKSRPEEQV--SSANTISAPTCYVNPFRTSQSSTIR-HDQLKSTLDSLETIVS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,823
Number of Sequences: 37544
Number of extensions: 388463
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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