Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K24
         (943 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    68   4e-11
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                68   4e-11
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    68   4e-11
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    68   4e-11
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    68   4e-11
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                66   2e-10
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    66   2e-10

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.65
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 33.9 bits (74), Expect = 0.86
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSAL+L DD+V
Sbjct: 1   MASVSELACIYSALVLHDDEV 21


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.65
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.65
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 68.1 bits (159), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.65
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 66.1 bits (154), Expect = 2e-10
 Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI ++G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 464
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 198 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXX 371
           T +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 372 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 461
                               SDDDMGFGLF
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLF 113



 Score = 34.3 bits (75), Expect = 0.65
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 128 MVSKAELACVYSALILVDDDV 190
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,258,417
Number of Sequences: 237096
Number of extensions: 1291387
Number of successful extensions: 1760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)