Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K23
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       26   2.4  
03_02_0178 + 6195402-6199158,6199438-6200003                           30   3.1  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   4.0  
12_01_0252 + 1868670-1869200,1870167-1871120                           29   4.0  
11_01_0252 + 1934505-1935032,1936001-1936957                           29   5.3  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    29   5.3  
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747           29   7.1  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 25.8 bits (54), Expect(2) = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 577 PXXGGGGGXFPXXGGFFFP 633
           P  GGGGG     GG ++P
Sbjct: 96  PYSGGGGGSSTGGGGIYYP 114



 Score = 23.0 bits (47), Expect(2) = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 541 PXXPPPKKKXGXPXXGGGGG 600
           P  PPP         GGGGG
Sbjct: 67  PQCPPPPSYPSGGGGGGGGG 86


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 608 GKXPPPPPXXGXPXFFXGGGXXGXKKKXPFXXGGGXFFXEK 486
           G  PPPPP    P  + G G    K       GGG F+  +
Sbjct: 22  GPPPPPPPPRRRPGDYDGDGFDRRKGFGGGGGGGGGFYDHR 62


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 680 FXXLGPLKFFXGXPXWGKKNPPXXGKXPPPPPXXGXP 570
           F  L PL  F   P +    PP     PPPPP    P
Sbjct: 301 FPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWP 337


>12_01_0252 + 1868670-1869200,1870167-1871120
          Length = 494

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 617 PXXGKXPPPPPXXGXPXFFXGGGXXGXKKKXPFXXGGG 504
           P     PPPPP    P    GGG  G   +     GGG
Sbjct: 59  PNHQPPPPPPPPLNWPTAGGGGGGSGGGGRGGAGGGGG 96


>11_01_0252 + 1934505-1935032,1936001-1936957
          Length = 494

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 599 PPPPPXXGXPXFFXGGGXXGXKKKXPFXXGGG 504
           PPPPP    P    GGG  G   +     GGG
Sbjct: 64  PPPPPPLNWPMAGGGGGGSGGGGRGGAGGGGG 95


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 620 PPXXGKXPPPPPXXGXPXFFXGGG 549
           PP  G  PPPPP    P    GGG
Sbjct: 7   PPGTGAPPPPPPAAVGPPGGVGGG 30


>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
          Length = 368

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -3

Query: 608 GKXPPPPPXXGXPXFFXGGGXXGXKKKXPFXXGGG 504
           GK P  PP  G      GGG  G KKK     GGG
Sbjct: 197 GKQPVAPPGNGNGG--GGGGGGGGKKKGKKGGGGG 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,662
Number of Sequences: 37544
Number of extensions: 176839
Number of successful extensions: 1475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)