Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_K23
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.68
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.68
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.68
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 3.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 8.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 632 GKKNPPXXGKXPPPPPXXGXPXFFXGG 552
GK+ P G PPPPP G P G
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSG 253
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 641 PXWGKKNPPXXGKXPPPPPXXGXP 570
P G PP G PPPPP G P
Sbjct: 284 PAGGSPPPPRAGSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 632 GKKNPPXXGKXPPPPPXXGXPXFFXGG 552
GK+ P G PPPPP G P G
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSG 274
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 641 PXWGKKNPPXXGKXPPPPPXXGXP 570
P G PP G PPPPP G P
Sbjct: 305 PAGGSPPPPRAGSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 632 GKKNPPXXGKXPPPPPXXGXPXFFXGG 552
GK+ P G PPPPP G P G
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSG 259
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 641 PXWGKKNPPXXGKXPPPPPXXGXP 570
P G PP G PPPPP G P
Sbjct: 290 PAGGSPPPPRAGSPPPPPPPRGSP 313
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -3
Query: 659 KFFXGXPXWGKKNPPXXGKXPPPPPXXGXPXFFXGGGXXGXKKKXP 522
+F G + PP G PPPP G P G G + P
Sbjct: 22 RFSVGETASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPP 67
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXGGGXXGXKKKXP 522
PP G PPPP G P G G + P
Sbjct: 98 PPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPP 130
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXGGGXXGXKKKXP 522
PP G PPPP G P G G + P
Sbjct: 129 PPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPP 161
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXGGGXXGXKKKXP 522
PP G PPPP G P G G + P
Sbjct: 253 PPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPP 285
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGG 741
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 736 PPITGGPPPPPPPGGLPPISGG 757
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGG 741
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 736 PPITGGPPPPPPPGGLPPISGG 757
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 303 PPITGGPPPPPPPGGLPPITGG 324
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXPXFFXG 555
PP G PPPPP G P G
Sbjct: 319 PPITGGPPPPPPPGGLPPISGG 340
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 570 RXPXGXGGGGXFPXXGG 620
R P G GGGG FP GG
Sbjct: 316 RTPAGGGGGGDFPAGGG 332
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXGXP 570
PP G PPPPP G P
Sbjct: 98 PPMMGGIPPPPPMFGAP 114
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 24.2 bits (50), Expect(2) = 8.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -3
Query: 620 PPXXGKXPPPPPXXG 576
PP PPPPP G
Sbjct: 535 PPPVSSIPPPPPIAG 549
Score = 22.2 bits (45), Expect(2) = 8.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 599 PPPPPXXGXP 570
PPPPP G P
Sbjct: 580 PPPPPMLGGP 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,360,989
Number of Sequences: 27780
Number of extensions: 111342
Number of successful extensions: 709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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