Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K22
         (991 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.36 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   7.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect(2) = 0.36
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 624 PPPPPLFFXXKXKXPPPP 677
           PPPPP  F    + PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 624 PPPPPLFFXXKXKXPPPP 677
           PPPPP F       PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 528 PPPPPPPXG 554
           PPPPPPP G
Sbjct: 9   PPPPPPPPG 17



 Score = 23.8 bits (49), Expect(2) = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 526 PPPPPPP 546
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.8 bits (44), Expect(2) = 2.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 625 PPPPPFFXXKKXKXPPP 675
           PPPPP    KK K   P
Sbjct: 25  PPPPPPGYVKKRKNKTP 41



 Score = 21.0 bits (42), Expect(2) = 0.36
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 732 PPPPPP 749
           PPPPPP
Sbjct: 24  PPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +3

Query: 531 PPPPPPXGXXXXXXXXXXXXXXXXXXXFXXXPPPPPLFFXXKXKXPPPP 677
           PPPPPP                         PPPPP         PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +3

Query: 528 PPPPPPPXGXXXXXXXXXXXXXXXXXXXFXXXPPPPPLFFXXKXKXPPPP 677
           PPPPPP                          PPPPP         PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +3

Query: 528 PPPPPPPXGXXXXXXXXXXXXXXXXXXXFXXXPPPPPLFFXXKXKXPPP 674
           PPPPPPP                         PPPPP       + PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAP-------PPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 666 PPPPXXXXXXXXXXXXXXXKKXPPPPPP 749
           PPPP               +  PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +1

Query: 526 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXFXXXPPPPPFFXXKKXKXPPP 675
           PPPPPPP                          PPPPP       + PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGR--------SAPPPPPPRSAPSTGRQPPP 378



 Score = 23.8 bits (49), Expect(2) = 1.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 526 PPPPPPP 546
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.0 bits (47), Expect(2) = 1.5
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +1

Query: 667 PPPXXXXXXXXXXXXXXXKKKXPPPPPP 750
           PPP                +  PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect(2) = 7.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 624  PPPPPLFFXXKXKXPPPP 677
            PPPPP+        PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724



 Score = 20.6 bits (41), Expect(2) = 7.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 528  PPPPPPP 548
            P PPPPP
Sbjct: 1705 PTPPPPP 1711


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,869
Number of Sequences: 5004
Number of extensions: 29466
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)