Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K20
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   102   5e-22
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   102   5e-22
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   102   5e-22
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    30   2.3  
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744...    30   3.1  
02_04_0293 + 21644415-21644533,21644686-21645118                       30   3.1  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  102 bits (244), Expect = 5e-22
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 116 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRM 277
           RRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTGTGRM
Sbjct: 32  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRM 85



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 279 RHLKIVRRRFRNGFKEGKPTPPKKAVA 359
           R+++ V RRF++ F+EG    P+K  A
Sbjct: 86  RYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  102 bits (244), Expect = 5e-22
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 116 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRM 277
           RRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTGTGRM
Sbjct: 11  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRM 64



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 279 RHLKIVRRRFRNGFKEGKPTPPKKAVASS 365
           R+L+ V +RF++ F+EG    P+K  A++
Sbjct: 65  RYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  102 bits (244), Expect = 5e-22
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 116 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRM 277
           RRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA RRKTTGTGRM
Sbjct: 11  RRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRM 64



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 279 RHLKIVRRRFRNGFKEGKPTPPKKAVASS 365
           R+++ V RRF++ F+EG    P+K  A++
Sbjct: 65  RYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 329  PFFKTITEAPPDNLQMTACGQFQ*SSCA*PSLTSGRIVILLQDIH 195
            P F  + + PPD  Q       Q S+   P+LT   ++I + DI+
Sbjct: 1067 PIFPRLVDLPPDRFQDALARILQGSAHTGPALTPAEVLIAIHDIN 1111


>07_03_1310 -
           25673140-25673418,25673837-25674082,25674189-25674465,
           25675474-25675751,25675845-25676378
          Length = 537

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 240 RLSAGRLLELAACRHLKIVRRRFRNGFKEGKPTPP 344
           RL+A + LELA     ++ RRR R+G     P PP
Sbjct: 500 RLNASQSLELAFIIAERLRRRRMRSGVNSNLPLPP 534


>02_04_0293 + 21644415-21644533,21644686-21645118
          Length = 183

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 146 RCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMPS 283
           RCG   + +Q   C++     A  R  +W ++  RR+  G G  P+
Sbjct: 29  RCGHCHHRLQHRYCSELYPRVAAYRRCNWCLREGRRRGGGGGGSPA 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,235
Number of Sequences: 37544
Number of extensions: 253637
Number of successful extensions: 2753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2734
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)