Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_K19
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 98 1e-21
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 29 0.70
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 27 4.9
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 6.5
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 26 6.5
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 8.6
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 26 8.6
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/114 (41%), Positives = 73/114 (64%)
Frame = +2
Query: 167 FKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVI 346
FK F RK E I+ K+P +IP+I E+ K ++ +DKKK+LVP D+T+ QF+ +
Sbjct: 5 FKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKS-DIAAIDKKKYLVPSDLTVGQFVYV 63
Query: 347 IRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 508
IR RI++ P +A+++ I+ + +L M+ YE + EDGFLYITY+ + FG
Sbjct: 64 IRKRIKLSPEKAIFIFIDEILPPTAAL-MSTIYEEHKSEDGFLYITYSGENTFG 116
Score = 62.9 bits (146), Expect = 6e-11
Identities = 28/93 (30%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +2
Query: 509 YQDDMQ-EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYI 685
++DD EK E + IR ++P+++P+ + V ++ + + K+LVP +LT+ QF+Y+
Sbjct: 5 FKDDFSFEKRKTESQRIREKYPDRIPV-ICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYV 63
Query: 686 IRTKMKLRDSQALYLLVNDKVLASHSMTMAQAY 784
IR ++KL +A+++ + D++L + M+ Y
Sbjct: 64 IRKRIKLSPEKAIFIFI-DEILPPTAALMSTIY 95
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 29.5 bits (63), Expect = 0.70
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 65 IHRAIHNATSALAMELNFITTLIKHDVNHNVKQ----CFKSKKPFIIRKEEVMAIKSKFP 232
+ +I N L +E N + D N N KQ C+++KKP I+++ ++ K FP
Sbjct: 8 VRASISNTLVTLTIEGNNDRYQVILDKNVNAKQFVKTCWRNKKPLIVKEGKIFVDKG-FP 66
Query: 233 -----TKIPLIVERYHKERNLPT 286
T + + E+Y LP+
Sbjct: 67 FDPCRTFLEALYEKYSYSSPLPS 89
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 721 CL*IAEFHLCSYNVQKLRHCEFLW 650
C+ EF CSY +++L+ C+ +W
Sbjct: 145 CINEHEFSQCSYYLEQLKACQAMW 168
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 316 FRD*KFFFVQCWQISLFMI 260
FR+ KFFF++C+ ++L+ I
Sbjct: 136 FRNHKFFFLECFYLNLYSI 154
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 819 SDSSSHRESGLLYACAIVILWLAKTLSFTSKYNACESRSFIFVLIMY 679
S +S ES +++ + L L TL+FT C+S F+ +++ +
Sbjct: 1140 STLNSFLESAIVHVTSFSNLRLCLTLAFTMTAEQCDSSRFLQMILAH 1186
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -3
Query: 244 WYFGG-EFTLD-CHYFFFSDNKWLFGFETLFHVVINIVFD*CCYKI*LHCEGTGRVMYRT 71
W G FT C + FS + ++ + T + I ++ CCY I C G
Sbjct: 281 WNMAGVPFTYSHCTLYLFSHDPSVYNWSTQYTTGIYVLLL-CCYYIFDTCNGQKNHFRNQ 339
Query: 70 MYGQVHPTKNLKEFP 26
+YG K + P
Sbjct: 340 IYGTEVHRKTFPQLP 354
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 401 NRSMLSMSLTMAQAYENYGDEDGFLYITYAS-QEVFGYQDDMQ 526
N++ + +++++ Y + +E Y Y + QEVFGYQD+ +
Sbjct: 2 NQTEAAPVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYE 44
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 567 KRCLMASTSRFDFSCISSW 511
KRC++A + D SCI +W
Sbjct: 6 KRCVLAYSGGLDTSCILAW 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,734,570
Number of Sequences: 5004
Number of extensions: 80357
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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