Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_K19
(921 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 100 2e-21
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 97 1e-20
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 66 5e-11
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 48 1e-05
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 46 3e-05
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 5.2
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 29 6.9
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 100 bits (239), Expect = 2e-21
Identities = 47/114 (41%), Positives = 75/114 (65%)
Frame = +2
Query: 167 FKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVI 346
FK + P R+ E I+ K+ +IP+IVE+ K ++P +DKKK+LVP D+T+ QF+ +
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKT-DVPEIDKKKYLVPADLTVGQFVYV 228
Query: 347 IRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 508
+R RI++ P +A+++ + N + SL M+ YE DEDGFLY+TY+ + FG
Sbjct: 229 VRKRIKLSPEKAIFVFVKNTLPPTASL-MSAIYEENKDEDGFLYMTYSGENTFG 281
Score = 55.2 bits (127), Expect = 7e-08
Identities = 24/83 (28%), Positives = 52/83 (62%)
Frame = +2
Query: 527 EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYIIRTKMKL 706
E+ E IR ++ +++P+ V + + +VP + + K+LVP +LT+ QF+Y++R ++KL
Sbjct: 177 ERRQAESARIREKYSDRIPVIVEKADKT-DVPEIDKKKYLVPADLTVGQFVYVVRKRIKL 235
Query: 707 RDSQALYLLVNDKVLASHSMTMA 775
+A+++ V + + + S+ A
Sbjct: 236 SPEKAIFVFVKNTLPPTASLMSA 258
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 97.5 bits (232), Expect = 1e-20
Identities = 44/117 (37%), Positives = 74/117 (63%)
Frame = +2
Query: 158 KQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQF 337
K FK R+ E I+ K+ +IP+IVE+ + ++P +DKKK+LVP D+T+ QF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERS-DIPDIDKKKYLVPADLTVGQF 61
Query: 338 LVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 508
+ ++R RI++ P +A+++ + N ++ + M+ YE DEDGFLY+TY+ + FG
Sbjct: 62 VYVVRKRIKLSPEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/76 (30%), Positives = 48/76 (63%)
Frame = +2
Query: 515 DDMQEKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPQELTMSQFLYIIRT 694
D E+ E IR ++ +++P+ V + R ++P + + K+LVP +LT+ QF+Y++R
Sbjct: 9 DHTLERRQAEANRIREKYSDRIPVIVEKAERS-DIPDIDKKKYLVPADLTVGQFVYVVRK 67
Query: 695 KMKLRDSQALYLLVND 742
++KL +A+++ V +
Sbjct: 68 RIKLSPEKAIFIFVKN 83
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 65.7 bits (153), Expect = 5e-11
Identities = 26/70 (37%), Positives = 47/70 (67%)
Frame = +2
Query: 299 KFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLY 478
++LVP D+T+ QF+ ++R RI++ +A+++ + N ++ + M+ YE DEDGFLY
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFLY 1942
Query: 479 ITYASQEVFG 508
+TY+ + FG
Sbjct: 1943 MTYSGENTFG 1952
Score = 40.7 bits (91), Expect(2) = 2e-05
Identities = 14/36 (38%), Positives = 28/36 (77%)
Frame = +2
Query: 635 TKFLVPQELTMSQFLYIIRTKMKLRDSQALYLLVND 742
T++LVP +LT+ QF+Y++R ++KL +A+++ V +
Sbjct: 1883 TRYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN 1918
Score = 35.1 bits (77), Expect = 0.079
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 194 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKK 301
R+ E I+ K+P +IP+IVE+ + ++P +DKKK
Sbjct: 1808 RQAEANRIREKYPDRIPVIVEKAERS-DIPDIDKKK 1842
Score = 25.8 bits (54), Expect(2) = 2e-05
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 527 EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTK 640
E+ E IR ++P+++P+ V + R ++P + + K
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERS-DIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 305 LVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYI 481
++ E + S + + ++ + P AL++ +NN + L M YE+Y DE DGFLY+
Sbjct: 206 VIVEKFSRSNLPEMEKRKLHLSPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYL 264
Query: 482 TYASQEVFG 508
Y+S++ FG
Sbjct: 265 CYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 350 RNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYITYASQEVFG 508
+ ++ + P AL++ +NN + L M YE+Y DE DGFLY+ Y+S++ FG
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYLCYSSEKTFG 87
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.1 bits (62), Expect = 5.2
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 323 TMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLT--MAQAYENYGDEDGFLYITYASQ 496
++S ++ I VK + LY + R L +S+T +AQ+YE E Q
Sbjct: 354 SVSMICAMLLEFIEVKGSFQLYYY-HGRDFLVLSMTAQLAQSYEGLKQEHDKKIGLLRKQ 412
Query: 497 EVFGYQDDMQEKSNREVEAI 556
EV G EK+ E+E++
Sbjct: 413 EVKGVDYLKMEKNKMEIESL 432
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +2
Query: 428 TMAQAYENYGDEDGFLYITYASQEVFGYQDDMQEKSNREVEAIRHRFPNKVPLYVTRYVR 607
T+A AY+N GD D + Y+ S DD + RE++ R P + R VR
Sbjct: 1332 TLATAYKNLGD-DVWRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVR 1390
Query: 608 DREVPVLGRTKFLVPQELTMSQFLY 682
+ + ++ V + + F Y
Sbjct: 1391 ENGSDIAEQSGEAVSRSMAGENFGY 1415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,586,450
Number of Sequences: 37544
Number of extensions: 495543
Number of successful extensions: 1157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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