Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K16
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.73 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.73 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPP 614
           PPPPP     G G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPP 614
           PPPPP    G G  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPP 615
           PPPPP    G G  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPP 615
           PPPPP     G   PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPP 614
           PPPPP      G  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPP 615
           PPPPP      G  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPP 614
           PPPPP     G   PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPP 615
           PPPPP     G   PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPP 615
           P PPP    GG   PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPP 614
           P PPP    GG   PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPPXX--KKKKKXXPXXGG 656
           PPPPP         PPPP    KK+K   P   G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 157 FFXFRELNYQPRKXLTTFFRDPGYLNTQ 74
           FF F    ++PR+ + TF R  GYL  Q
Sbjct: 275 FFRFYAYKFEPREKVVTFRRPDGYLTKQ 302


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPPPXXKKKKXXXP 645
           PPPPP +    G  P PP  +      P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPPXXKKKKKXXP 644
           PPPPP      G  P PP  +      P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 562 PPPPPXKXXGGGXXPPP 612
           PPPPP      G  PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 561 PPPPPXXXXGGGGXPPPPXXKKKKKXXP 644
           PPPPP       G  PPP    +    P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNP 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,248
Number of Sequences: 5004
Number of extensions: 24712
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)