Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_K15
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 28 2.2
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.9
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 27 3.8
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 5.0
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 6.6
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 6.6
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 6.6
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 8.8
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 26 8.8
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 8.8
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 454 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVP 609
N+H G ++++ +IVS+ K T + + S + +SG ST +P
Sbjct: 77 NNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.9
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Frame = +1
Query: 286 LET*S*KDETIKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHK 465
+ET + + + P + + PS+ PE + ++ E S+ + +N T +
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484
Query: 466 SYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKII-YVQTDGLQ 642
T ++K + V F+ D K+ SE D PK ++ ++
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSED------VKKEPSEEKKLEVSDEAPKAAPLAESKKVE 538
Query: 643 DNQLYQVAGSSGDSIIMSRAQTNK 714
+ + + V+ D ++ A NK
Sbjct: 539 EKEPFYVSKDKKDISAVNLADLNK 562
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 484 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTDGL 639
+ K + + Q + A +GN SKE+ SEN + ++Y + D +
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 297 LGLQDLECCSFHQEKLHHNXHSRFRSHIT 211
LGLQDL F + +HHN +RS+I+
Sbjct: 15 LGLQDLPV--FREADIHHNPVDVYRSYIS 41
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = +1
Query: 388 YSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 567
+ LNE +D + I L + YG + +++ + GN K S
Sbjct: 92 FGKLNENTVKDN--VSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRS 149
Query: 568 HSENSGTSTQDTVPKIIYVQTDGL--QDNQLY 657
HS +T +P + + G+ + N +Y
Sbjct: 150 HSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIY 181
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 371 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 547
++ L + N LR + +I Y Q + L+ + RTS V T+W L +M
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675
Query: 548 YIKVKNLIPKTQ 583
YI++++ TQ
Sbjct: 676 YIEIESTGQSTQ 687
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +1
Query: 454 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVPKIIYVQTD 633
N+ +Y +DE +QDK+ F DNG E S+ + + + + +
Sbjct: 29 NAINTYEDVANSEDEFYNAQDKILFDADNGEQADELEL-SDEELVALESSSDEEDGNAEE 87
Query: 634 GLQDNQLYQVAGSSGDSIIMSRAQTNKG 717
L +N+ +++G D++ NKG
Sbjct: 88 NLSENE--ELSGKKKDAVNEEELYDNKG 113
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 273 CSFHQEKLHHNXHSRFRSHITVFEXSL 193
CS +++ L H H + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 427 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 543
T+N IP LT ++YG + D S V + + NG
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNG 249
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 296 NHRKTKP*KYLMTFATSRIQVRDQNIATLKITRL-LMNESLRISILK 433
N+ K K + A ++ RD+ I LK+ + L N SL + LK
Sbjct: 931 NNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLK 977
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,802
Number of Sequences: 5004
Number of extensions: 60509
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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