Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K14
         (1019 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 26/111 (23%), Positives = 33/111 (29%)
 Frame = +3

Query: 90  FGXRDXGXNXSXFNKXXPPFLVQRXFXPQXKXFGPKXGFPXXLKNPEKXXXXXXXAPXPL 269
           FG        S +    PP   Q+ F        P+ GF    + P +          P 
Sbjct: 293 FGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPP 352

Query: 270 KXXFGPPXXKRAXXFGXXPXPXTKKXGXSXKKXGGGPPXFFXXLXXKGGAP 422
              F  P  +    FG  P P +   G        GPP  F       GAP
Sbjct: 353 PQQFHAPSPQS---FGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAP 400


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 267 GGVGPXXGXGGXFXGFLKXWGTPXWG 190
           GG G   G GG   G    WG P WG
Sbjct: 250 GGGGRGGGWGGWGRGSRWGWGRPSWG 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,786,235
Number of Sequences: 27780
Number of extensions: 114373
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2688795166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)