Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K13
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    35   0.018
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    30   0.39 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.6  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    28   2.1  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 629 FAAEAEDFSQSVLLL-LSICDQLTCLDVHPNVEEWYPRQAV 510
           F A +  F+Q++  + L +C  ++CL VHP ++E+ PR  +
Sbjct: 224 FCASSCSFNQAINTINLLLCIAVSCLSVHPTIQEYNPRSGL 264


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 389 MSEILTKKNVPSKRFDKIPIYVVEEHNDALQFI 487
           +SE+LTKKN+P        IY+ +E N A++F+
Sbjct: 7   VSEVLTKKNLPPLSLYNFYIYIRDEEN-AIEFL 38


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 407 KKNVPSKRFDKIPIYVVEEHNDALQFIYSAIGGKKLPV-EGTTL 535
           KKNV  K    +P+ ++ E N+A   + + +G K +P   G TL
Sbjct: 826 KKNVKKKGTFGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTL 869


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 527 TTLLHLDAHPDMLIDRKLKGEEARSG-RNLLPLLQIENWIVPAVS 658
           T L+H + HP++L+D +   EE  +G  NL  + +     VPA++
Sbjct: 137 TALVH-ERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAIN 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,349
Number of Sequences: 5004
Number of extensions: 69435
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)