Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K13
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285...    32   0.54 
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636...    29   6.6  
01_05_0691 + 24330491-24332269                                         29   6.6  

>02_04_0028 +
           19027510-19027983,19028087-19028278,19028369-19028545,
           19029568-19029663,19030487-19030618,19030950-19031008,
           19031234-19031321,19031433-19031693
          Length = 492

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 437 KIPIYVVEEHNDALQFIYSAIGGKKLPVEGTTLLHLDAHPDMLIDRKLKGEEAR 598
           ++P+ V   HN   Q IY+A G   + V   TLL+  AH D+L  R   GE +R
Sbjct: 432 RVPLQVENLHNGPAQDIYTADG---VDVPRVTLLYTGAHYDILYPRP-PGERSR 481


>11_04_0179 +
           14562288-14562860,14562874-14563489,14563529-14563658,
           14563694-14564540
          Length = 721

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -1

Query: 674 DLCGLLIQRAQSSFLFAAEAEDFSQSVLLLLSICDQLTCLDVHPNVEEWYPRQAVFSLL 498
           DL   LI  AQ+S  +    ED +  +   L IC   T   V PN  +   R  +FSLL
Sbjct: 31  DLKSSLITMAQASPFYGKPNEDANAHLQQFLEICSTYTIKGVSPNAVKL--RLFLFSLL 87


>01_05_0691 + 24330491-24332269
          Length = 592

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 642 IQFSICSRGRRFLPERA-SSPFNLRSINMSGCASKCRRVVPSTG 514
           I+FS C RG  F P+ + +SPF + +   + C +K     PSTG
Sbjct: 14  IKFSSC-RGVTFEPKPSPASPFAIAAAAAAACPAKPPPAAPSTG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,945,134
Number of Sequences: 37544
Number of extensions: 427272
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)