Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K13
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 502 REKTACRGYHSSTFGCTSRHVN*SQIERRRSTLWEKSSASAAN 630
           +EKT    YH ST   +  H+   +   R ++  + S +S A+
Sbjct: 384 KEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLAD 426


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 502 REKTACRGYHSSTFGCTSRHVN*SQIERRRSTLWEKSSASAAN 630
           +EKT    YH ST   +  H+   +   R ++  + S +S A+
Sbjct: 384 KEKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLAD 426


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 449 YVVEEHNDALQFIYSAIGGKKLPV 520
           ++ E  NDA   +YSA+G   +P+
Sbjct: 237 WICELTNDAGYVVYSALGSFYIPM 260


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 79 RDXEKWKGR 53
          RD EKWKG+
Sbjct: 6  RDGEKWKGK 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,107
Number of Sequences: 438
Number of extensions: 4907
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)