Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K07
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    95   4e-19
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    95   4e-19
AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    93   9e-19
AY046538-1|AAL03971.1|  388|Homo sapiens retina specific regulat...    30   9.9  
AF366054-1|AAK54122.1|  273|Homo sapiens RGS20 ret splice varian...    30   9.9  

>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 94.7 bits (225), Expect = 4e-19
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
 Frame = +3

Query: 150 FFITAAVLLASAEAKFFKDCGSKLAXVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 329
           F + A    A AE   FKDCGS    +  V VS C   +  C L +    ++ + FT   
Sbjct: 8   FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNI 65

Query: 330 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 509
                   VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + +
Sbjct: 66  QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124

Query: 510 EVKWELQSE-HGDLVCVLINAKLV 578
            V+W+LQ + +  L C  I  ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 94.7 bits (225), Expect = 4e-19
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
 Frame = +3

Query: 150 FFITAAVLLASAEAKFFKDCGSKLAXVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 329
           F + A    A AE   FKDCGS    +  V VS C   +  C L +    ++ + FT   
Sbjct: 8   FLLLALSTAAQAEPVQFKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNI 65

Query: 330 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 509
                   VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + +
Sbjct: 66  QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124

Query: 510 EVKWELQSE-HGDLVCVLINAKLV 578
            V+W+LQ + +  L C  I  ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148


>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 93.5 bits (222), Expect = 9e-19
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
 Frame = +3

Query: 150 FFITAAVLLASAEAKFFKDCGSKLAXVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLH 329
           F + A    A AE   F+DCGS    +  V VS C   +  C L +    ++ + FT   
Sbjct: 8   FLLLALSTAAQAEPVQFRDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNV 65

Query: 330 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 509
                   VHG++M +P+PFP+PE D CK +G+ CP+++     Y   LP+   YP + +
Sbjct: 66  QSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKL 124

Query: 510 EVKWELQSE-HGDLVCVLINAKLV 578
            V+W+LQ + +  L C  I  ++V
Sbjct: 125 VVEWQLQDDKNQSLFCWEIPVQIV 148


>AY046538-1|AAL03971.1|  388|Homo sapiens retina specific regulator
           of G-protein signaling splice variant 6 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 258 ESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMN 374
           + +  C+ K  +  +I  QF PL    R NT++H +  N
Sbjct: 6   QDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITEN 44


>AF366054-1|AAK54122.1|  273|Homo sapiens RGS20 ret splice variant 1
           protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 258 ESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMN 374
           + +  C+ K  +  +I  QF PL    R NT++H +  N
Sbjct: 6   QDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITEN 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,395,479
Number of Sequences: 237096
Number of extensions: 2383851
Number of successful extensions: 4616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4604
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)