Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_K01
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 32 0.66
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.0
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 2.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 2.7
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 3.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 3.5
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 6.2
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 6.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 6.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 6.2
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
T16G12.5 protein.
Length = 1142
Score = 31.9 bits (69), Expect = 0.66
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 171 PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 338
P ED S N + AKK + +L+ V AP T ++ + VD NE+ + L E
Sbjct: 834 PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 761 PXPPGXRXFXXXGGPSGFPXXXNPLXPGXXG-LGXXGXXXPQXGEXGFPXKXG 916
P PPG G +G P PL PG G G G P G G P G
Sbjct: 193 PGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGP-PGPPGAPGNDG 244
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 761 PXPPGXRXFXXXGGPSGFPXXXNPLXPGXXG-LGXXGXXXPQXGEXGFPXKXG 916
P PPG G +G P PL PG G G G P G G P G
Sbjct: 193 PGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGP-PGPPGAPGNDG 244
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = +2
Query: 761 PXPPGXRXFXXXGGPSGFPXXXNPLXPGXXGLGXXGXXXPQXGEXGFPXKXG 916
P PPG G G P PL PG G G PQ G G P + G
Sbjct: 189 PGPPGAPGAPGTPGEPGVPAQSEPLIPGEP--GPPGEAGPQ-GPPGSPGQPG 237
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = +2
Query: 761 PXPPGXRXFXXXGGPSGFPXXXNPLXPGXXGLGXXGXXXPQXGEXGFPXKXG 916
P PPG G G P PL PG G G PQ G G P + G
Sbjct: 189 PGPPGAPGAPGTPGEPGVPAQSEPLIPGEP--GPPGEAGPQ-GPPGSPGQPG 237
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -2
Query: 917 PPXXGENRIPPXGGXXNPXPP-XRXXPGXXGXXXXGNRKGPXXXQTXFXPGG 765
PP + +PP GG P PP R PG G G P T PGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPG---GGGGMYPPLIPTRPGPGG 821
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -2
Query: 917 PPXXGENRIPPXGGXXNPXPP-XRXXPGXXGXXXXGNRKGPXXXQTXFXPGG 765
PP + +PP GG P PP R PG G G P T PGG
Sbjct: 773 PPGGRQAPMPPRGGPGAPPPPGMRPPPGAPG---GGGGMYPPLIPTRPGPGG 821
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = -1
Query: 918 SPXFXGKPXSPXWGXXXPXXPXPXXPGXXGXXXXGKPEGPPXXXNXLXPGG 766
+P G P P P P P P G P GP L P G
Sbjct: 112 APGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKGPLGPPG 162
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 177 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 347
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 177 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 347
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +2
Query: 707 PGFXGEVWEVFSWX*XNRPXPPGXRXFXXXGGPSGFPXXXNPL-XPGXXGLGXXGXXXPQ 883
PGF GE E + +P PG + G G+P P PG GL
Sbjct: 754 PGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDVGYPGPDGPPGLPGQDGLPGLNGERGD 813
Query: 884 XGEXGFPXKXG 916
G+ +P G
Sbjct: 814 NGD-SYPGNPG 823
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +2
Query: 707 PGFXGEVWEVFSWX*XNRPXPPGXRXFXXXGGPSGFPXXXNPL-XPGXXGLGXXGXXXPQ 883
PGF GE E + +P PG + G G+P P PG GL
Sbjct: 1011 PGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDVGYPGPDGPPGLPGQDGLPGLNGERGD 1070
Query: 884 XGEXGFPXKXG 916
G+ +P G
Sbjct: 1071 NGD-SYPGNPG 1080
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +2
Query: 707 PGFXGEVWEVFSWX*XNRPXPPGXRXFXXXGGPSGFPXXXNPL-XPGXXGLGXXGXXXPQ 883
PGF GE E + +P PG + G G+P P PG GL
Sbjct: 1010 PGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDVGYPGPDGPPGLPGQDGLPGLNGERGD 1069
Query: 884 XGEXGFPXKXG 916
G+ +P G
Sbjct: 1070 NGD-SYPGNPG 1079
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -1
Query: 915 PXFXGKPXSPXWGXXXPXXPXPXXPGXXGXXXXGKPEGPPXXXNXLXPGGXG 760
P G P P G P P PG G G P+G P PGG G
Sbjct: 394 PSAFGAPQGPG-GPGGYGPPPPGGPGAPGSY--GPPQGGPGGFGPPPPGGPG 442
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = -1
Query: 918 SPXFXGKPXSPXWGXXXPXXPXPXXPGXXGXXXXGKPEGPPXXXNXLXPGG 766
+P G P P P P P P G P GP L P G
Sbjct: 114 APGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPG 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,824
Number of Sequences: 27780
Number of extensions: 292255
Number of successful extensions: 979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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