Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J20
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.051
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.74 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   2.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   7.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 813 PXPPGGGGXFXXXXXPPPPPPPXXXKKXK 727
           P PP     F     PPPPPPP   KK K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 814 PPXPXGGGXFFXXXXXPPPPPPXXXKKXK 728
           PP P     F      PPPPPP   KK K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 831 GGXKXXPXPPGGGGXFXXXXXPPPPPPP 748
           GG    P PPG  G       PPPPPPP
Sbjct: 759 GGPPPPPPPPGVAGA---GPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect(2) = 0.74
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 807 PPGGGGXFXXXXXPPPPPP 751
           PP G G       PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 0.74
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 765 PPPPPP 748
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 154 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALGPETVKKNFGT 300
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 272 GPKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 102
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 767  PPPPPPPXXKKXKK 726
            PPPPPPP  +  KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 242 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 114
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 752 GGGGGGXXXXKKXPPP-PGGXG 814
           GGG GG       PPP PGG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFG 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,429
Number of Sequences: 5004
Number of extensions: 37576
Number of successful extensions: 323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)