Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J19
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         34   0.18 
08_01_0534 - 4635122-4635380,4635716-4635837                           33   0.31 
05_06_0278 + 26894802-26895362                                         29   3.9  
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    29   6.7  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 52  ASGSAAGLCQGSRVQRARPNMWLGSRGPGAPAG 150
           A+  AAG CQ  R +R    +WLGS G G   G
Sbjct: 165 AAAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 57  GQRSGXVPGXPRAT-RPPQHV----AGVAWARCAGRRRPATSLGLWTGRATDVTR 206
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG A + TR
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 63  RSGXVPGXPRATRPPQHVAGVAWARCAGRRRPATSLGLWTGRATDVTRLDDSRP 224
           RSG  P  P++ RP   +AGV      GR    T      G +T     DD +P
Sbjct: 75  RSGGAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGSTKPLSDDDGKP 128


>05_05_0136 -
           22631260-22631325,22631735-22631821,22631898-22632026,
           22632122-22632190,22632271-22632351,22632598-22632702,
           22632786-22633016,22633098-22634272,22634391-22634457,
           22636705-22637778,22638119-22638274,22638827-22638985,
           22639062-22639220,22639306-22639422,22639502-22639612,
           22639690-22640358
          Length = 1484

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 167 RRRWTPPAGAPGPRDPSHMLGRARCTRXPWHXPAALPEAK 48
           R+R     GAPG  D  H   +  CT  P    A  PE +
Sbjct: 5   RKRPDSDPGAPGEADEEHPADKRPCTAEPSTSAAVAPEGE 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,892
Number of Sequences: 37544
Number of extensions: 301199
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)