Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J18
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.027
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.027
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.027
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 26 0.56
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.1
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPPXXXP 729
PPP GG PP GG PPPPP P
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPP 741
PPP GG PP F G PPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPPXXXP 729
PPP GG PP GG PPPPP P
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPP 741
PPP GG PP F G PPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPPXXXP 729
PPP GG PP GG PPPPP P
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPP 741
PPP GG PP F G PPPPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 26.2 bits (55), Expect(2) = 0.56
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 788 PPAXXFXXGGXPPPPP 741
PP GG PPPPP
Sbjct: 541 PPPVGMANGGPPPPPP 556
Score = 24.2 bits (50), Expect(2) = 0.56
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 764 GGXPPPPPXXXP 729
GG PPPPP P
Sbjct: 574 GGPPPPPPPPPP 585
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPP 741
PPP G PP GG PPPPP
Sbjct: 75 PPPPG----PGGIPPPPPMFAGGIPPPPP 99
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPPXXXP 729
PP GG PP GG PPPPP P
Sbjct: 327 PPGMGGMPPP---PPPGMRYPGGMPPPPPPRYP 356
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +1
Query: 649 GGGXXXXXXXXXXXXPPP-PXXXXXXXXGXXXGGGGGXPPXKKXXAGG 789
GGG PPP P G GGGGG P GG
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +1
Query: 649 GGGXXXXXXXXXXXXPPP-PXXXXXXXXGXXXGGGGGXPPXKKXXAGG 789
GGG PPP P G GGGGG P GG
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 827 PPPXGGXXXXXXXPPAXXFXXGGXPPPPPXXXP 729
PP GG PP GG PPPPP P
Sbjct: 337 PPGMGGMPPP---PPPGMRYPGGMPPPPPPRYP 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,160
Number of Sequences: 27780
Number of extensions: 253021
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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