Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J17
(925 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical p... 99 4e-21
AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose tr... 99 4e-21
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 73 4e-13
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 73 4e-13
AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical... 29 3.6
AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical ... 28 8.2
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 8.2
AF016446-6|AAC24162.1| 322|Caenorhabditis elegans Serpentine re... 28 8.2
>Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical
protein C50F4.14 protein.
Length = 363
Score = 99.1 bits (236), Expect = 4e-21
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = +1
Query: 424 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 603
F+NK L SS V L+APLFITW+QC+++ +C LS+ G+F FP P + ++
Sbjct: 46 FLNKYLLSS--VQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPS-MPIDAKISRE 102
Query: 604 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGR 696
V+PL++++ MI+ NNLCLK+VGV FYYVGR
Sbjct: 103 VLPLSVVFVAMISFNNLCLKYVGVSFYYVGR 133
>AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose
transporter protein.
Length = 363
Score = 99.1 bits (236), Expect = 4e-21
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = +1
Query: 424 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 603
F+NK L SS V L+APLFITW+QC+++ +C LS+ G+F FP P + ++
Sbjct: 46 FLNKYLLSS--VQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPS-MPIDAKISRE 102
Query: 604 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGR 696
V+PL++++ MI+ NNLCLK+VGV FYYVGR
Sbjct: 103 VLPLSVVFVAMISFNNLCLKYVGVSFYYVGR 133
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +1
Query: 424 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 603
F+NK L S L+ PLFIT QC+++ IC L + +
Sbjct: 43 FINKHLLSGIGAELDIPLFITCCQCLVTIGICLVLRWGSFKTKYLKTFSKLDINFETCID 102
Query: 604 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGR 696
V+PL+I++ MI+ NNLCL++VGV FYYVGR
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGR 133
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/91 (39%), Positives = 50/91 (54%)
Frame = +1
Query: 424 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 603
F+NK L S L+ PLFIT QC+++ IC L + +
Sbjct: 43 FINKHLLSGIGAELDIPLFITCCQCLVTIGICLVLRWGSFKTKYLKTFSKLDINFETCID 102
Query: 604 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGR 696
V+PL+I++ MI+ NNLCL++VGV FYYVGR
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGR 133
>AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical
protein H04M03.12 protein.
Length = 260
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 199 HFSIYQTKILFLYLSKNCFVS 261
HF +Y+ +LFL +KNCF S
Sbjct: 139 HFFLYKQNLLFLKHAKNCFTS 159
>AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical
protein Y94A7B.6 protein.
Length = 335
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = +1
Query: 442 FSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMK--KVIPL 615
F S ++ L L F C +F+ F+L G+ G+ P WS+ ++ K++P+
Sbjct: 54 FWSASLDLSISLLAQPFMCTPAFA-GFSL----GIWGLIGVPT-VVWSLGIIAVFKMVPI 107
Query: 616 AIM------YTLMIATNNLCLKHVGVPF 681
+I+ YT++ TNN +++ PF
Sbjct: 108 SIISMFENRYTVLFVTNNGAWRYLRYPF 135
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 424 FVNKTLFSSQTVALEAPLFITWFQCIIS--FSICFTLS 531
FV +F + L AP F WF+ II ++C+ LS
Sbjct: 54 FVQVRMFHLNFIILVAPFFGIWFELIIGKLITMCYQLS 91
>AF016446-6|AAC24162.1| 322|Caenorhabditis elegans Serpentine
receptor, class h protein20 protein.
Length = 322
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 105 NIITIAELLYFMISKFSLKQYSCHKFIHFILTLFY 209
N +I+EL YF K S+ Y HKF HFI L Y
Sbjct: 104 NGASISELFYFRY-KASVS-YKEHKFTHFIQVLVY 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,790
Number of Sequences: 27780
Number of extensions: 325739
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -