Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J17
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    29   0.079
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   5.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   9.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 510 LNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGN--NVYFDDS 641
           +N++YI    W+ +Y F+S R+ L +G      +T N  N Y  DS
Sbjct: 73  MNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDS 118


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +3

Query: 498 YNFILNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGN 620
           YN+ +N      +W    ++ + K N +    +   + TGN
Sbjct: 57  YNYTMNYLLDTDQWGDKTFVIIMKFNGVPSSLNVITNKTGN 97


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 595 MKKVIPLAIMYTLMIAT 645
           M+ VIPL I+Y ++  T
Sbjct: 37  MRMVIPLTIIYMIIFVT 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,990
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)