Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J16
         (1014 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    25   3.2  
07_01_0080 + 587674-588510                                             27   4.3  

>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 407 PPPPXXPPPXKKXPP 451
           PPP   PPP +  PP
Sbjct: 268 PPPQVPPPPPQAPPP 282



 Score = 23.8 bits (49), Expect(2) = 3.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 254 GGGGVXXPPPPXX*XPP 304
           G GG   PPPP    PP
Sbjct: 260 GSGGPPRPPPPQVPPPP 276


>07_01_0080 + 587674-588510
          Length = 278

 Score = 27.1 bits (57), Expect(2) = 4.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 407 PPPPXXPPPXKKXPP 451
           PPPP  PPP    PP
Sbjct: 105 PPPPPPPPPPPPPPP 119



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 254 GGGGVXXPPPPXX*XPP 304
           GG G+   PPP    PP
Sbjct: 83  GGDGMFRRPPPPPPPPP 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,207,196
Number of Sequences: 37544
Number of extensions: 287874
Number of successful extensions: 5990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3993
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2987258700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)