Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J11
         (971 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...   195   5e-50
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    48   1e-05
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    48   1e-05
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    45   9e-05
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    39   0.006
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    36   0.058
U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical pr...    29   6.6  
U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   8.7  

>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score =  195 bits (475), Expect = 5e-50
 Identities = 88/165 (53%), Positives = 116/165 (70%)
 Frame = +3

Query: 153 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 332
           MSI++Y GG VVAM G +CV IA+D R G Q  T++T+  KV ++   +YVGL G  +D 
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 333 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 512
           +TV +++ FR NLYEL+ENR ++P+  S M+SNL Y+ RFG YF EP++AGLD   N+PY
Sbjct: 61  RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119

Query: 513 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFE 647
           +C MD IGC + P DFV  GT  E L G+CE  W  N+KPDELFE
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFE 164


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
 Frame = +3

Query: 174 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 350
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 351 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 530
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +  +  V + D 
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169

Query: 531 IGC 539
           IGC
Sbjct: 170 IGC 172


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
 Frame = +3

Query: 174 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 350
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 351 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 530
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +  +  V + D 
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169

Query: 531 IGC 539
           IGC
Sbjct: 170 IGC 172


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
 Frame = +3

Query: 174 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 353
           G  ++AM+    V + TD R    +   S    K+  +   + V   G A DTQ +    
Sbjct: 23  GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82

Query: 354 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD-PYDNQPYVCNMDL 530
           K+ +++Y + EN+ +     S +    LY  R        ++AG D     Q Y      
Sbjct: 83  KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP--- 138

Query: 531 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 638
           IG     +    SG+ S  + G  ++ W PNL  +E
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEE 174


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 34/143 (23%), Positives = 59/143 (41%)
 Frame = +3

Query: 210 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 389
           + +A D R        S +  K+  +G  +   + G A D Q   + +     LYEL+E 
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 390 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 569
             +     S   +N LY  R     +  ++AG D     P +  +D  G   + +   V 
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199

Query: 570 GTCSEQLYGMCEALWEPNLKPDE 638
           G+ S   YG+ +  ++P +  DE
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDE 222


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
 Frame = +3

Query: 174 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 353
           G   V ++G+DC+ I  +K+  I A        K+  +   + +   GL+ D + +  R 
Sbjct: 30  GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88

Query: 354 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 509
           +     Y+L     +     S  ++N   ++RF       P+ I  +I G D +D  P
Sbjct: 89  RIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143


>U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK742.3 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 189 AMKGQDCVAIATDKRFGIQAQTVSTN 266
           AMK    +AIA     G+QAQT  TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138


>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 558 FVVSGTCSEQLYGMCEALWEPNLKPDELFET 650
           FV SGT S  + G C+ L E  LK +E+ E+
Sbjct: 91  FVSSGTLSVNIDGSCQVLAEEVLKVEEIDES 121


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 90  FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 200
           F LITL  FQ+  C ++Y        Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,832
Number of Sequences: 27780
Number of extensions: 334821
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)