Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J09
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   9.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +2

Query: 554  GGXPRAPXPGXPXGXHAAXAPRXXGGXXPFFPWXXPPXGXAPPXGRXPXGGVPPP 718
            G  P  P    P    +A  P+      P  P   PP   APP    P    PPP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +1

Query: 742  PXSXPPGXGAXXXXPPCPXPRGXXRDRXPXXARPPTXXSSXRXXRXXXXXXGXARXPXPP 921
            P   PP        PP P P G      P  A PP    S           G    P PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV--PPVPP 1193

Query: 922  P 924
            P
Sbjct: 1194 P 1194



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 742  PXSXPPGXGAXXXXPPCPXPRGXXRDRXPXXARPPTXXSS 861
            P S  P   A    PP P P G      P  A PP    S
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPS 1108


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 865 APXTXXWEGGPGXGXG--PXXXPGG 797
           AP     EGGPG G G  P   PGG
Sbjct: 75  APPPPGAEGGPGAGFGGFPGAGPGG 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,906
Number of Sequences: 5004
Number of extensions: 20334
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)