Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J07
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 134 2e-32
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 118 1e-27
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 111 1e-25
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 98 2e-21
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 86 7e-18
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 67 3e-12
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 42 2e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.16
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 28 1.5
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 4.7
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 8.2
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 8.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 8.2
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 134 bits (323), Expect = 2e-32
Identities = 70/179 (39%), Positives = 103/179 (57%)
Frame = +1
Query: 196 KNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHMW 375
K G + I E++ S GG I P GY + + + E G + I DE Q G GR G+ M+
Sbjct: 206 KQSTGSLACMIVETILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGS-MF 264
Query: 376 AFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANA 555
+FE +VPDI+T+ K +G G +AAVIT+ EI K D G ++ T+ +P+ AI +
Sbjct: 265 SFEHHGIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGST 324
Query: 556 VLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPA 732
VL V++ +NL+E+A G L S LK KH L+ DVRG GL G+E+ + + P+
Sbjct: 325 VLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPS 383
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 118 bits (283), Expect = 1e-27
Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 4/209 (1%)
Frame = +1
Query: 109 KYTHPADSESVEEVGRMYADEVGNICNEIKNKNGGICAFIAESLQ-SCGGQIIPPDGYFR 285
+Y + + E+ EE A E+ + + + + AF+AE++ +C G P GYF+
Sbjct: 183 EYRYKENGETTEEYVARLAKELEDEILRVGPEK--VAAFVAETVSGACTGCATPVPGYFK 240
Query: 286 RVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFETQDVVPDIVTMGKPMGNGH-PVAAVIT 462
+ + + G + DEV G GR GT M A+E + V PDI ++ K +G G+ P++ +
Sbjct: 241 AMRKVCDKYGVIFYLDEVMSGIGRTGT-MHAWEQEGVTPDIQSIAKCLGGGYQPISGALV 299
Query: 463 TPEIAKSFS--DTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCED 636
I F D + F TY +P++C+ A AV ++ ++L+ERA+ +G +L + +
Sbjct: 300 GHRIMNVFEQKDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHE 359
Query: 637 LKHKHRLVGDVRGRGLFVGVELVTDRETR 723
H VG++RGRGLF G+E+V D+ T+
Sbjct: 360 TFDSHPNVGNIRGRGLFWGLEIVKDKATK 388
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 111 bits (268), Expect = 1e-25
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 1/207 (0%)
Frame = +1
Query: 214 ICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFETQD 393
+ AF+ E +Q G ++P DGY Y+ + IADEVQ G R G M E +
Sbjct: 207 VAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTG-KMLCIEHSN 265
Query: 394 VVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVI 570
V PD+V +GK + G +PV+AV+++ EI +F + G + +TYGGNP+ A++ A L+V+
Sbjct: 266 VKPDVVILGKAISGGVYPVSAVLSSREIMLNF-EPGT-HGSTYGGNPLGAAVSIAALEVV 323
Query: 571 EEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAKH 750
+EE L ERA+ +G R ++ K +V VRGRGL V V D TA
Sbjct: 324 KEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRGLLNAV--VIDESKTNGRTAWDLC 379
Query: 751 VVNRMREEKILISRDGPDSNVLKFKPP 831
++ MR +L N+++F PP
Sbjct: 380 LI--MRSRGVLAK--PTHGNIIRFSPP 402
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 97.9 bits (233), Expect = 2e-21
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Frame = +1
Query: 190 EIKNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTH 369
++ +G +FI E +Q GG I+PP GY + + + + DE+Q G GR G
Sbjct: 229 QVALSSGMYRSFIVEPIQGEGGVIVPPPGYLAKARELCTKYDTYLVLDEIQTGCGRTG-K 287
Query: 370 MWAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEI---AKSFSDTGVEYFNTYGGNPVS 537
WA E ++++PD + K G P A I T E+ A + +T + TY N +
Sbjct: 288 FWACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLG 347
Query: 538 CAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVELVTDR 714
A A +D I + +LL R ++G + R L+ K ++ DVRGRG+ VG+E
Sbjct: 348 LAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIP 407
Query: 715 ETRTPATAE--AKHVVNRMREE---KILISRDGPDSNVLKFKPP 831
E+ E A +VN + + ++ S + P +V +F PP
Sbjct: 408 ESVQEEFGEYYATPIVNDLADTYHVQVYCSLNNP--SVFRFLPP 449
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 85.8 bits (203), Expect = 7e-18
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Frame = +1
Query: 205 NGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFE 384
N A I E +Q GG + + + + G I DE+Q G GR G +WA
Sbjct: 221 NDKTAAVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD-LWAHS 279
Query: 385 -TQDVV-PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAV 558
+DV PDI+T+ KP+ NG P+ A I + +IA E+ +T+GGNPV+C +
Sbjct: 280 IVKDVASPDIITVAKPLANGLPIGATIVSSKIAAEIHPG--EHGSTFGGNPVACRVGTFC 337
Query: 559 LDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVE 699
++ + +L+ + L SR +D K+ L+ GRGL +G++
Sbjct: 338 VNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQ 385
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 67.3 bits (157), Expect = 3e-12
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 3/220 (1%)
Frame = +1
Query: 31 SLRFTXEVPRNQTGFMWHQYRTCTGXKYTHPADSESVEEVGRMYADEVGNICNEIKNKNG 210
SL T P ++ G + +P + E VEE + + + + N +
Sbjct: 203 SLSTTRSKPVHKLGMPAFPWPQADFPALKYPLE-EHVEENAKEEQRCIDQVEQILTNHHC 261
Query: 211 GICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFETQ 390
+ A I E +QS GG +F ++ + + I DEVQ G G GT +WA E
Sbjct: 262 PVVACIIEPIQSEGGDNHASPDFFHKLQATLKKHDVKFIVDEVQTGVGSTGT-LWAHEQW 320
Query: 391 DVV--PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLD 564
++ PD+VT K AA I ++A ++FNT+ G+P + +L
Sbjct: 321 NLPYPPDMVTFSKKFQ-----AAGIFYHDLA--LRPHAYQHFNTWMGDPFRAVQSRYILQ 373
Query: 565 VIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRG 681
I++++LL VG+ L + E+L KH + ++RG+G
Sbjct: 374 EIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRGKG 413
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 41.5 bits (93), Expect = 2e-04
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 4/173 (2%)
Frame = +1
Query: 190 EIKNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGG-VCIADEVQVGFGRVGT 366
E+ N + I A I E++Q GG IP D F + Q E V I DEV G
Sbjct: 196 ELVNSSQDIAAVIVEAMQGAGG-AIPADKEFMQTIQLECEKNDIVFILDEVMTSRLSPGG 254
Query: 367 HMWAFETQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDT---GVEYFNTYGGNPVS 537
+ + PD+ T+GK +G G P A +I F + + T+ + ++
Sbjct: 255 LQ---QIYCLKPDLTTLGKYLGGGLPFGAFGGRADIMSCFDPRLPGSLSHSGTFNNDTLT 311
Query: 538 CAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 696
L + ++R + +G+ L E H ++ + G G + +
Sbjct: 312 LTAGYVGLTELYTPEAVKRLNALGDGLRKDIESYCHNTKM--SITGLGSIMNI 362
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 611 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPEL 727
+IY + I S NIDSS V + AS +SP+ P+L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 472 IAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENL 585
I K++ DT E+ GNPV I N++LD+ + ENL
Sbjct: 532 IEKTYVDTVDEF-----GNPVKVLIDNSMLDLTDMENL 564
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 306 MHILVYTSEISVRRYNLSPTTLQTLRYESTNASILILNLIADIAYFVGVHPTYFLYR 136
++I YT +S+R+Y+ S +Q+ + +L A I Y + H Y+
Sbjct: 348 LNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAHITYLLDCHGIIQFYQ 404
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 562 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 741
+++ +ENL+E ++ HL S E +K K + + R + +E + + T+ A
Sbjct: 1325 ELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ-SKIEQLELKNTKLAAAWR 1383
Query: 742 AKH--VVNRMREE 774
K+ VVN+ E+
Sbjct: 1384 TKYEQVVNKSLEK 1396
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 258 LSPTTLQTLRYESTNA--SILILNLIADIAYFVGVHPTYFLY 139
LSP+T+ + + + S+++ L + + +G+H YFL+
Sbjct: 389 LSPSTILSNAFSKVSLPNSLILRVLFFSLLFIIGIHIFYFLF 430
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 222 FHSGESAELWGTDYTSGRIFQTCIPICA*SRW 317
++S ++ L+ TDYT +F P + SRW
Sbjct: 223 WYSDKNFTLYVTDYTENELFFPMSPYTSSSRW 254
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 436 GHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNH 615
GH AV++ PEI +DT F +Y + + + V +L RV
Sbjct: 810 GHYDDAVLSVPEIFIQITDTSTS-FGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKA 868
Query: 616 LLSRCEDLKHKHRLV 660
+ RC++L H ++
Sbjct: 869 V--RCDELMHLKNVI 881
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,517
Number of Sequences: 5004
Number of extensions: 81620
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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