Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J07
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 245 3e-65
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 201 6e-52
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 111 5e-25
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 111 5e-25
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 33 0.20
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 31 0.83
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 1.4
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 5.8
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 5.8
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 245 bits (600), Expect = 3e-65
Identities = 116/242 (47%), Positives = 162/242 (66%), Gaps = 3/242 (1%)
Frame = +1
Query: 127 DSESVEEVGRMYADEVGNICNEIKNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVH 306
+ + + G+ Y+D+V +I N+++++ G+ A+ AE+LQSCGGQ+IPP YF+ V +V
Sbjct: 207 NEDKLYAAGKQYSDDVKSILNDVESRQCGVAAYFAEALQSCGGQVIPPKDYFKDVATHVR 266
Query: 307 EAGGVCIADEVQVGFGRVGTHMWAFETQD--VVPDIVTMGKPMGNGHPVAAVITTPEIAK 480
GG+ I DEVQ GFGR+G WA + D +PDIVTMGKPMGNG PV+AV T EIA
Sbjct: 267 NHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGKPMGNGFPVSAVATRKEIAD 326
Query: 481 SFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLV 660
+ V YFNTYGGNPV+CA +V+ V+++ENLLE + ++G L DL+ KH +
Sbjct: 327 ALGGE-VGYFNTYGGNPVACAAVISVMKVVKDENLLEHSQQMGEKLEVALRDLQKKHECI 385
Query: 661 GDVRGRGLFVGVELVTDRETRTPATAEAKHVVNRMREE-KILISRDGPDSNVLKFKPPWC 837
GD+RG GLF G++LV DR TR P A + +R+ IL++ DGP +N+LK KPP C
Sbjct: 386 GDIRGVGLFWGIDLVKDRNTREPDQKLAIATILALRKSYGILLNADGPHTNILKIKPPLC 445
Query: 838 YN 843
+N
Sbjct: 446 FN 447
Score = 34.7 bits (76), Expect = 0.089
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 60 KPDWVHVAPVPDVYR 104
+PDWVHVAP PDV+R
Sbjct: 181 QPDWVHVAPCPDVFR 195
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 201 bits (490), Expect = 6e-52
Identities = 96/211 (45%), Positives = 139/211 (65%)
Frame = +1
Query: 205 NGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFE 384
+ G AF+ ES+Q GG + P GY ++ Y+ V + GG+ IADEVQ GFGR+G+H W FE
Sbjct: 218 SSGPAAFLIESIQGVGGTVQYPHGYLKKSYESVQKRGGLAIADEVQTGFGRLGSHFWGFE 277
Query: 385 TQDVVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLD 564
+QD +PD+VTM K +GNG P+ AV+T+ EIA SF+ + YFNTYGGNP++ + AVL+
Sbjct: 278 SQDALPDMVTMAKGIGNGFPLGAVVTSKEIADSFNKS--LYFNTYGGNPLASVVGKAVLE 335
Query: 565 VIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEA 744
VIEEE L E ++ VG++ L + + +GDVRG+GL +GVEL+ D + + A A+
Sbjct: 336 VIEEEKLQENSAVVGDYFLKQLAAI--DDATIGDVRGKGLMIGVELI-DEQGKPLAAAKT 392
Query: 745 KHVVNRMREEKILISRDGPDSNVLKFKPPWC 837
+ + + +LI + G NVL+ KPP C
Sbjct: 393 AAIFEDTKNQGLLIGKGGIHGNVLRIKPPMC 423
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 111 bits (268), Expect = 5e-25
Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)
Frame = +1
Query: 193 IKNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHM 372
IK+KN + AF+ E +Q G ++P GY + V + + I DEVQ G GR G +
Sbjct: 200 IKDKN--VAAFMVEPIQGEAGVVLPDPGYLKGVSDLCKKYNVLFITDEVQSGLGRSGK-L 256
Query: 373 WAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIA 549
A +V PDIV +GK + G +PV+AV+ + + E+ +TYGGNP++C +A
Sbjct: 257 LAHYHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG--EHGSTYGGNPLACKVA 314
Query: 550 NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTP 729
A L++++EE L+E ++ +G+ L+S+ + L +V VRG+GLF + V +++
Sbjct: 315 IAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAI--VINKK---- 366
Query: 730 ATAEAKHVVNRMREEKILISRDGPDSNVLKFKPPWCYN 843
+A V +++E +L D +++F PP C N
Sbjct: 367 --YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCIN 400
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 111 bits (268), Expect = 5e-25
Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)
Frame = +1
Query: 193 IKNKNGGICAFIAESLQSCGGQIIPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRVGTHM 372
IK+KN + AF+ E +Q G ++P GY + V + + I DEVQ G GR G +
Sbjct: 135 IKDKN--VAAFMVEPIQGEAGVVLPDPGYLKGVSDLCKKYNVLFITDEVQSGLGRSGK-L 191
Query: 373 WAFETQDVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIA 549
A +V PDIV +GK + G +PV+AV+ + + E+ +TYGGNP++C +A
Sbjct: 192 LAHYHDNVRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPG--EHGSTYGGNPLACKVA 249
Query: 550 NAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTP 729
A L++++EE L+E ++ +G+ L+S+ + L +V VRG+GLF + V +++
Sbjct: 250 IAALEILQEEKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAI--VINKK---- 301
Query: 730 ATAEAKHVVNRMREEKILISRDGPDSNVLKFKPPWCYN 843
+A V +++E +L D +++F PP C N
Sbjct: 302 --YDAWKVCLKLKENGLLAKNTHGD--IIRFAPPLCIN 335
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 61.3 bits (142), Expect = 9e-10
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 7/204 (3%)
Frame = +1
Query: 109 KYTHPADSE---SVEEVGRMYADEVGNICNEIKNKNGGICAFIAESLQSCGGQIIPPDGY 279
+Y +P D + ++ AD I +E K ++ + A I E +Q+ GG +
Sbjct: 234 RYKYPLDQNVAYNKKQDQECLADVEAKI-SEWKRRDNDVAAIIVEPIQAEGGDHYGSPAF 292
Query: 280 FRRVYQYVHEAGGVCIADEVQVGFGRVGTHMWAFETQDV--VPDIVTMGKP-MGNGHPVA 450
F+ + + G V I DEVQ G G G +WA + ++ PD+VT K + G+
Sbjct: 293 FQGLRDITSKHGIVFIVDEVQTGGGATG-DIWAHDHWNLSSPPDMVTFSKKLLTGGYFYG 351
Query: 451 AVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRC 630
+ E +NT+ G+P + ++VI+ + L+E++ VG R
Sbjct: 352 EHLRVKE--------AYRIYNTWMGDPTKLLLLEKAVEVIKRDGLIEQSREVGAEFQKRL 403
Query: 631 EDLK-HKHRLVGDVRGRGLFVGVE 699
+L+ + RGRG F V+
Sbjct: 404 GELQASSGGKLDQARGRGTFAAVD 427
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
protein D2045.2 protein.
Length = 1792
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +1
Query: 430 GNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIA--NAVLDVIEEENLLERASR 603
G+ HP+ + + +AK F D EY G VSC L+ EEE +
Sbjct: 397 GSRHPILVLNDSDVVAKMFEDLSTEYQEDIAGAIVSCLTTWLPLFLESTEEELRAKLREV 456
Query: 604 VGNHLLS-----RCEDLKHKHRLVGD 666
+ H+ S R LK+ L+G+
Sbjct: 457 ISEHIRSDFPNCRLAALKYAEALIGE 482
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 468 GGGNYSGHRMSITHRFAHSDYVGNNVLSFK---GPHVCADTTEPYLNLIGDTHTT 313
GGG SG + R + DY + L F P VC EPY N I THTT
Sbjct: 140 GGGTGSGFTSLLMERLS-VDYGKKSKLEFSIYPAPQVCTAVVEPY-NSILTTHTT 192
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = -2
Query: 530 GLPPYVLKYSTPV--SEKLLAISGVVITAATGCPLPIGLPIVTMSGTTS*VSKAHMCVPT 357
G PP LK T + + AI I++ T P P+ P VT+ + + H T
Sbjct: 1398 GTPPSPLKPKTKLGLTSHPSAIPPWAISSKTLAP-PVAPPTVTVPSNIAPSTTGHQSQQT 1456
Query: 356 RPNPT*TSSAIHTPPASCTYWYTRLK 279
RP PT I P A T + + L+
Sbjct: 1457 RPTPTTHRPGITPPLAPKTIYPSSLQ 1482
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 262 IPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRV 360
+PP G ++ + ++ +AG VC AD + G G V
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVV 162
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 262 IPPDGYFRRVYQYVHEAGGVCIADEVQVGFGRV 360
+PP G ++ + ++ +AG VC AD + G G V
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVV 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,198,726
Number of Sequences: 27780
Number of extensions: 499158
Number of successful extensions: 1322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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