Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J05
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          214   1e-55
11_01_0155 - 1287003-1287452                                          214   1e-55
03_06_0097 - 31632238-31632525,31633386-31633769                       43   3e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    38   0.009
07_03_0227 - 15398371-15398925                                         30   2.3  
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757...    29   7.0  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  214 bits (522), Expect = 1e-55
 Identities = 95/143 (66%), Positives = 119/143 (83%)
 Frame = +1

Query: 97  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 276
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 277 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 456
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 457 PRRCEPKKFGGPGARARYQKSYR 525
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  214 bits (522), Expect = 1e-55
 Identities = 95/143 (66%), Positives = 119/143 (83%)
 Frame = +1

Query: 97  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 276
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 277 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 456
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 457 PRRCEPKKFGGPGARARYQKSYR 525
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
 Frame = +1

Query: 109 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 279
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 280 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 459
             D+ V V GGG   Q  AI   +++AL+      +  A+K  ++         LL  D 
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201

Query: 460 RRCEPKKFGGPGARARYQKSYR 525
           R  E KK G   AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 38.3 bits (85), Expect = 0.009
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = +1

Query: 127 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 306
           G++K + A  + + G G   VN +  D   P +L ++          +     D+  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 307 GGGHVAQVYAIRQAISKAL 363
           GGG   QV AIR  IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 247 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 137
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>03_02_0334 +
           7570568-7570709,7571622-7571844,7572178-7572257,
           7572869-7572929,7573670-7573796
          Length = 210

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 21/61 (34%), Positives = 24/61 (39%)
 Frame = -2

Query: 211 PSPMGARLHAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF*QRKTD*IKILRN 32
           PSP  A+  AA    A N  LRWR     +L R       P       Q K D  KI R 
Sbjct: 7   PSPPPAQASAAEASGASNASLRWRILRRALLARSASTSRAPEETSNDQQDKNDTNKISRK 66

Query: 31  S 29
           +
Sbjct: 67  T 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,309
Number of Sequences: 37544
Number of extensions: 401252
Number of successful extensions: 1171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)