Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J04
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   1.2  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    27   4.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    27   4.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   4.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.8  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   6.3  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   6.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   6.3  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 261 YATTSEELA--LNIINRALDV-PSSIAPTKGPNLPNW 160
           Y T + EL      I R+  + P SI+   GPN+PNW
Sbjct: 776 YTTKTGELISYTEFIERSRGIRPGSISTADGPNVPNW 812


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 299 GWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGT 460
           G  E +P ++  ++K  +EK   NLV LG    D  A          + W Q T
Sbjct: 94  GEKELEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFT 147


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 461 GKPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGL-PLS 595
           G+PL  ++     R S   D  L  VP  T N+   + LC + PL+
Sbjct: 251 GRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 548 TRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVD 643
           T   N +K + GLP+ P F   K+R+  D  +
Sbjct: 543 TNISNAMKAVNGLPIHPLFKKSKIRYAPDRCE 574


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = -1

Query: 519 SIVEDVLISSQTIALYKGFPVPCSQTIVVSLWFVTPTAIISSGFPPN 379
           S+++DV   +   A++K FP+  +   + ++ ++    I+  G   N
Sbjct: 92  SLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYINQLPILKGGHKSN 138


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 514 SGRCSHIQPNNCVVQRFPCALLPNYSCFSLVCDSNCYY 401
           +  C   Q NN  +    C++  N+S  SL+    C Y
Sbjct: 227 AAECDAWQANNSELSSSICSISANWSTLSLLSTEGCVY 264


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 478 VVQRFPCALLPNYSCFSLV 422
           +V + PCAL PN +C  +V
Sbjct: 178 IVLQIPCALAPNIACLLIV 196


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 847 GKTDLGTSKTLIAGIPI 797
           GK D G+ KTL  GIPI
Sbjct: 164 GKADTGSGKTLAFGIPI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,792,208
Number of Sequences: 5004
Number of extensions: 83770
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)