Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J04
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 219 2e-57
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430... 33 0.41
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 31 1.2
06_03_0675 - 23428948-23431389 29 3.8
03_05_0309 + 22990117-22990286,22990371-22990557,22990763-229908... 29 5.0
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 29 5.0
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 5.0
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 29 6.7
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 28 8.8
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856... 28 8.8
02_02_0006 - 6037539-6038570 28 8.8
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 219 bits (535), Expect = 2e-57
Identities = 106/217 (48%), Positives = 144/217 (66%), Gaps = 10/217 (4%)
Frame = +2
Query: 185 VGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAV 364
V +ID+GT+S RFI++ ++ V A HQ E +QH+P+ GWVE DP I+ VK C+ KA+
Sbjct: 7 VASIDQGTTSTRFIVYDRHAKPV-ASHQLEFKQHYPEAGWVEHDPMEIMESVKICMAKAL 65
Query: 365 ENLVALGGNPE-DIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 541
+ A G N + + A+G+TNQRETT++W + TG PLYNAIVW+D RTS +L +
Sbjct: 66 DKAAADGHNMDVGLKAIGITNQRETTVMWSKSTGLPLYNAIVWMDARTSPICRRLESDLS 125
Query: 542 NKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 721
+ + CGL +S YFSA+K+ WL +NVD VKNA++ G FGT+D W+IWNLTG
Sbjct: 126 G---GRTHFVETCGLAISTYFSALKVLWLIENVDAVKNAVRAGDALFGTIDTWLIWNLTG 182
Query: 722 GPNG---------GKHVTDVTNASRTMLMNIENLNWD 805
G G G HVTD +NASRTMLMN++ L+WD
Sbjct: 183 GIGGTDRDGNKVFGHHVTDCSNASRTMLMNLKALDWD 219
>02_01_0580 +
4303020-4303211,4303838-4303879,4304538-4304646,
4304731-4304859,4305002-4305121,4305223-4305343,
4305888-4306044,4306377-4306427,4306573-4306695
Length = 347
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 458 TGKPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 637
TG N IVW+D R +++ RN L+ CG +SP A KL W+ +N
Sbjct: 19 TGDARRNIIVWMDHRAVDQAERI------NARNSPVLQ-YCGGGVSPEMQAPKLLWVKEN 71
Query: 638 V 640
+
Sbjct: 72 L 72
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +2
Query: 323 AILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQG----TGKPLYNAIVW 490
A+LA V I V+ L G P +I R T+V+ G T + + N + W
Sbjct: 266 AVLAAVDDAINDGVDVLSLSLGGPNEIHGTLHAVARGITVVFAGGNDGPTSQTVQNTVPW 325
Query: 491 LDMRTSSTIDKLLDTVPNKTRNKNYL 568
+ ++TID+ T + N+ L
Sbjct: 326 VITVAAATIDRTFPTTISLGNNEKLL 351
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 401 IIAVGVTNQRETTIVWEQGTGKPLY 475
I AV +N E T+VW G+P+Y
Sbjct: 61 IFAVWFSNSAEKTVVWSANLGRPVY 85
>03_05_0309 +
22990117-22990286,22990371-22990557,22990763-22990849,
22991101-22991346
Length = 229
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 446 WEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSP 598
W Q + + +V+L M T +DKL+ ++ +++ + P LPL P
Sbjct: 103 WRQNPASSIASCVVFLVMFTKDIVDKLV--AADQEASRDGMPPFGNLPLRP 151
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 397 LWI-SPQCHQILHCFFYARFNYGQ 329
LW+ S +CH + C+F++R+ GQ
Sbjct: 122 LWVPSSKCHLSIACYFHSRYKAGQ 145
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 314 DPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNA 481
D Y +L+ V+ I++ ++L ++ D+ AVG +Q + T W + + Y+A
Sbjct: 26 DKYVLLSGVRHEIQELKDDLESMNACLRDLAAVGDYHQSQQTRTWMKQVREVAYDA 81
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 191 AIDEGTSSARFII-FKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVE 367
A ++G+S + F ++S + +H+K++EQ V I+A + ++KA+E
Sbjct: 654 AFNDGSSPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDGTVTIVAKTQPIMDKAIE 713
Query: 368 NLVALGGNPEDIIAVGVTNQRETTIVWEQG 457
+ L G I VG T + + + E G
Sbjct: 714 KVEFLVGRE---IEVGRTYKGVVSSIKEYG 740
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 479 AIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDN 637
A W ++ T + +L T+ ++ L L LPLSP S + L W + +
Sbjct: 18 ATSWPELLTPFDLSRLRATLASRPLTPRRLGRLLALPLSPATSLLLLTWYASS 70
>07_01_1010 +
8561656-8561764,8563666-8563919,8564309-8564331,
8564926-8564962,8565503-8565985
Length = 301
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 373 GGIGGKSRGYNSSWSHKPKRNN 438
GG GG RGY S SH P N
Sbjct: 50 GGGGGHGRGYTSHRSHNPNNPN 71
>02_02_0006 - 6037539-6038570
Length = 343
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 412 WSHKPKRNNY--SLGARHRETFVQRNCLAGYENIFH 513
W P+ + Y SLG RH E + Q C + + FH
Sbjct: 15 WGDSPEPDEYYASLGLRHAEAYFQSPCGRLFTHSFH 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,038,726
Number of Sequences: 37544
Number of extensions: 529405
Number of successful extensions: 1316
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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