Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_J04
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical pr... 221 4e-58
U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.4
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 29 3.4
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81571-7|CAB04620.1| 272|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 28 7.9
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 28 7.9
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 28 7.9
>U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical
protein R11F4.1 protein.
Length = 502
Score = 221 bits (541), Expect = 4e-58
Identities = 105/207 (50%), Positives = 142/207 (68%)
Frame = +2
Query: 182 LVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKA 361
L+ AID+GTSS+RF++F+A++ ++V HQ E+ Q FP GWVE DP + V +CI K
Sbjct: 3 LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKT 62
Query: 362 VENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 541
+E L LG + ++I +VGV NQRET+IVW++ TGKPLYNAIVWLD RTSS D+ +
Sbjct: 63 IEKLENLGISADEIKSVGVANQRETSIVWDKETGKPLYNAIVWLDTRTSSLADEAISRTA 122
Query: 542 NKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 721
+K +K+ + GLP+ PYFSA+KL+WL NV VK A G FGTVD W+IW LTG
Sbjct: 123 SK--SKDEFRAKTGLPIHPYFSALKLKWLFQNVPEVKKAYADGNLMFGTVDTWLIWKLTG 180
Query: 722 GPNGGKHVTDVTNASRTMLMNIENLNW 802
+VTDV+NASRT+L+++ W
Sbjct: 181 A-----YVTDVSNASRTLLLDLHKRKW 202
>U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical
protein C55B6.1a protein.
Length = 523
Score = 37.9 bits (84), Expect = 0.010
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +2
Query: 194 IDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQ---EGWVEQDPYAILAVVKTCIEKAV 364
+D GT++ R +++ + + +Y +K + + E VE +P + I+KA
Sbjct: 12 VDIGTTTIRSVVYDSKCKERGSYQEKVNTIYTTRNDDEVLVEIEPEQLFLQFLRVIKKAY 71
Query: 365 ENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPN 544
E L P + VG+ QR + ++W + T K I W D R ++ L ++
Sbjct: 72 ETLP-----PNAHVDVGLCTQRNSIVLWNKRTLKEETRIICWNDKRANNKCHNLNNSFLL 126
Query: 545 KTRN 556
K N
Sbjct: 127 KALN 130
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 358 SSGEFGGIGGKSRGYNSSWSHKPKRNNYSLG 450
S G +GG G + RGY + + PKR Y G
Sbjct: 519 SRGRYGGGGFQKRGYGGNDNFAPKRPRYDNG 549
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 436 CFSLVCDSNCYYILWISPQCHQILHCFFYARF 341
CF C++N Y+ L + H L+C F F
Sbjct: 603 CFCQNCNNNTYWCLRTKNETHNFLYCEFVTEF 634
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 503 TSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLS-DNVDPVKNAMKKGTCR 679
+SST + DT N + P G P+ P L W S N +++ ++KG +
Sbjct: 421 SSSTPPSIPDTASNFRQGSGEQTPRVGSPVFPVIQKKTLPWRSKTNAQDIEDFIQKGRFK 480
Query: 680 FGTVD 694
+ D
Sbjct: 481 YFNYD 485
>Z81571-7|CAB04620.1| 272|Caenorhabditis elegans Hypothetical
protein M01G12.9 protein.
Length = 272
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 182 LVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQ 283
++GAI T FI+FK N V+ KE Q
Sbjct: 87 VIGAIPSSTGVENFIVFKTNDVQVIVKTPKEKGQ 120
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 50 DCNKFY*Y*CRSFAN*MFKVHLCNFIC 130
+C KF+ Y C N + +H+C +C
Sbjct: 127 ECEKFFYYGCGGNDNKFYSLHMCRKVC 153
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 50 DCNKFY*Y*CRSFAN*MFKVHLCNFIC 130
+C KF+ Y C N + +H+C +C
Sbjct: 127 ECEKFFYYGCGGNDNKFYSLHMCRKVC 153
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 50 DCNKFY*Y*CRSFAN*MFKVHLCNFIC 130
+C KF+ Y C N + +H+C +C
Sbjct: 127 ECEKFFYYGCGGNDNKFYSLHMCRKVC 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,046,393
Number of Sequences: 27780
Number of extensions: 479144
Number of successful extensions: 1171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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