Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J03
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    27   3.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   5.0  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   5.0  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   5.0  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   6.6  

>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 322 FYSPIRDYSKEESPAPKY*TVFLILISC 405
           ++SP+ D+ K+E  AP Y  V +  ++C
Sbjct: 163 YFSPVNDHYKKEGLAPAYHRVRMCELAC 190


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 23  YREFLKILNLAIDIDIDSNI 82
           Y EFLK+LNL +   ID NI
Sbjct: 274 YHEFLKLLNLYVQGIIDRNI 293


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 271 KKTNPEPWEAYR-NKQYKF 324
           K+ NP PW++++ N  YKF
Sbjct: 119 KELNPAPWDSFKHNSSYKF 137


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 181 PLYVCVGIGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY 303
           PL+V   +G  G    TL++ +  PD  ++     +PW+ +
Sbjct: 22  PLWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQVCDPWQFF 62


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 265 KIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVL 137
           +I Q+YA+   + R  L   L  H   EGS     S++ GS+L
Sbjct: 81  EISQEYARYSKQKRASLRRYLEKHGKLEGS--MKESSINGSLL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,502
Number of Sequences: 5004
Number of extensions: 45982
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)