Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J02
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    100   3e-21
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    31   1.8  
03_01_0515 - 3864796-3865425                                           29   4.1  
11_06_0445 - 23679918-23680282,23680415-23683349                       29   5.5  
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125...    29   7.2  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = +2

Query: 275 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 451
           MPGLMACR ++ P++  KGARI+GSLH T+Q AVLIETL  LG         ++      
Sbjct: 1   MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60

Query: 452 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH 613
                      ++AWKGET +EY WC E+ L +  G   ++I+DDGGD T L+H
Sbjct: 61  RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 614 TKYPDLLKDVKGITEETTTGVHNLYK 691
           +KY  + + + G++EETTTGV  LY+
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQ 181


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +2

Query: 248 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 409
           KE+M    E PG++  R     + +++   IA  LH  V      QTA L+  +  L  +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255

Query: 410 VQWSSSNIYSTQDE 451
           V+  S  + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -2

Query: 529 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 353
           +P   V  +++  +  ++  + C + G  L  +NV +G    CS        N  L  +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178

Query: 352 *AAGYSGTFEYFSWSIFPTTCHKAWHF 272
            A   +  +  F W I  TT  K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 560  KPLNMILDDGGDLTNLVHTKYPDLLKDV 643
            +P + I  DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034


>09_06_0342 +
           22410674-22411060,22412219-22412299,22412376-22412579,
           22412765-22412959,22413064-22413228,22413501-22413761,
           22413908-22414126,22414285-22414504,22414591-22414613,
           22414728-22414766
          Length = 597

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 200 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 379
           +PP  +  ++    GR+     EKE   L   +R+   A+IL G R  G+ ++ V+ A +
Sbjct: 33  RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89

Query: 380 IETLIELGAEVQW 418
            E +  L  E  W
Sbjct: 90  NEVIAALAREAGW 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,158
Number of Sequences: 37544
Number of extensions: 378513
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)