Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J01
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    97   4e-21
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    33   0.079
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    27   5.2  
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    26   9.0  

>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 54/140 (38%), Positives = 68/140 (48%)
 Frame = +1

Query: 247 GXTTRXXQDYLRXKNXXXXXXXXXXXXSNILEWHXRXXRAGXKSLRRGIXSWKXNXSXSE 426
           G   R  ++YL  +              NILEWH             G           +
Sbjct: 5   GAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTL-IFPPD 63

Query: 427 XPXKPSSIDMITPNGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKTPTLG 606
            P KP +I MITP+GRF+TNTRLCLS   F P +WNP+W +STIL GL+SFM     T G
Sbjct: 64  YPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTG 123

Query: 607 SIETSEYXKRCLAA*SLKIN 666
            I TSE  +R  A  + + N
Sbjct: 124 GIVTSESTRRTYAKDTKRFN 143


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 421 SEXPXKPSSIDMITP--NGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKT 594
           ++ P KP  ++  T   +    +N  +CL I     D W+PA +IS +L  + S + +  
Sbjct: 58  TDYPFKPPKVNFTTRIYHPNINSNGSICLDILR---DQWSPALTISKVLLSICSLLTDPN 114

Query: 595 P 597
           P
Sbjct: 115 P 115


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 424 EXPXKPSSIDMITP--NGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFM 582
           + P KP  +  ++   +     N  LCL I     + W+P + ++ ILT + S +
Sbjct: 62  QYPNKPPLVKFVSTMFHPNVYANGELCLDILQ---NRWSPTYDVAAILTSIQSLL 113


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 430 PXKPSSI----DMITPNGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFM 582
           P  P S+     ++ PN  + TN  +C+ I       W+PAWS+ +    ++S +
Sbjct: 65  PISPPSVYFQTKIVHPNISW-TNGEVCMDILKTH---WSPAWSLQSACLAIISLL 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,995
Number of Sequences: 5004
Number of extensions: 30466
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)