Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_J01
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin con...   120   1e-27
AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin con...   105   5e-23
U23517-9|AAB93334.2|  314|Caenorhabditis elegans Ubiquitin conju...    74   1e-13
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    31   0.92 
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        29   4.9  
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    29   4.9  

>AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein26 protein.
          Length = 203

 Score =  120 bits (290), Expect = 1e-27
 Identities = 66/147 (44%), Positives = 83/147 (56%)
 Frame = +1

Query: 259 RXXQDYLRXKNXXXXXXXXXXXXSNILEWHXRXXRAGXKSLRRGIXSWKXNXSXSEXPXK 438
           R  +DY R               +NILEW      A       GI   K      + P K
Sbjct: 12  RLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKL-LFPKDFPFK 70

Query: 439 PSSIDMITPNGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKTPTLGSIET 618
           P +I M+TPNGRF+TNTRLCLSI  + PDTWNPAW++STI+TGL+SFM +  PTLGS+ T
Sbjct: 71  PPAILMLTPNGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQPTLGSLVT 130

Query: 619 SEYXKRCLAA*SLKINXXXKMFVNCSL 699
           SE  ++ LA  S + N   K F  C+L
Sbjct: 131 SESERKLLAKKSKQWNLKDKSF--CAL 155


>AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein15 protein.
          Length = 218

 Score =  105 bits (252), Expect = 5e-23
 Identities = 58/149 (38%), Positives = 73/149 (48%)
 Frame = +1

Query: 220 VNMAXTXVTGXTTRXXQDYLRXKNXXXXXXXXXXXXSNILEWHXRXXRAGXKSLRRGIXS 399
           V  A T  +    R  +DY +                NILEWH    R    +   G   
Sbjct: 10  VPAAGTASSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHY-CLRGSPDTPFYGGYY 68

Query: 400 WKXNXSXSEXPXKPSSIDMITPNGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSF 579
           W         P  P +I MITPNGRF+TNTRLCLSI  + P++WNP W++S IL GL SF
Sbjct: 69  WGKVIFKENFPWSPPAITMITPNGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSF 128

Query: 580 MLEKTPTLGSIETSEYXKRCLAA*SLKIN 666
           M E +P  GSI  +   +R  AA S + N
Sbjct: 129 MNENSPAAGSIAGTPQDQRMYAAASKEFN 157


>U23517-9|AAB93334.2|  314|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein6 protein.
          Length = 314

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 331 NILEWHXRXXRAGXKSLRRGIXSWKXNXSXSEXPXKPSSIDMITPNGRFKTNTRLCLSIX 510
           N+ EWH             GI   +     ++ P KP ++ ++TPNGRF+ N ++CLSI 
Sbjct: 37  NLFEWHFTIRGTLGTDFEGGIYHGRI-IFPADYPMKPPNLILLTPNGRFELNKKVCLSIS 95

Query: 511 XFXPDTWNPAWSISTILTGLLSFMLEKTP--TLGSIETSEYXKRCLA 645
            + P+TW P+WSI T L  L+ F L  TP   LGS++     ++ LA
Sbjct: 96  GYHPETWLPSWSIRTALLALIGF-LPSTPGGALGSLDYPPKERQRLA 141


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 424 EXPXKPSSIDMITPNGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKTP 597
           + P +  ++D++ P G  K + +  L+I     DTW     I+ +   +  F+ + TP
Sbjct: 83  DYPQRKPAVDLLDPQGLSKEDVQNLLTILRQMADTWEGCVVIAELAHRVREFLTDHTP 140


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 424 EXPXKPSSIDMITP--NGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKTP 597
           E P KP ++  I+   +     +  +CL I     + W+P + ++ ILT + S + E  P
Sbjct: 62  EYPNKPPTVKFISKMFHPNVYADGSICLDILQ---NRWSPTYDVAAILTSIQSLLDEPNP 118


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 424 EXPXKPSSIDMITP--NGRFKTNTRLCLSIXXFXPDTWNPAWSISTILTGLLSFMLEKTP 597
           E P KP ++  I+   +     +  +CL I     + W+P + ++ ILT + S + E  P
Sbjct: 62  EYPNKPPTVKFISKMFHPNVYADGSICLDILQ---NRWSPTYDVAAILTSIQSLLDEPNP 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,069
Number of Sequences: 27780
Number of extensions: 174237
Number of successful extensions: 259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)