Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_I24
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 85 2e-17
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 76 8e-15
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 32 0.096
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 31 0.17
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 2.1
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 27 4.8
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 6.3
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 8.4
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 26 8.4
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 26 8.4
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 84.6 bits (200), Expect = 2e-17
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +2
Query: 536 LEKEHEAITKVKYIDRIQIGKYEIDTWYFSPYPDEYGKQSKLWLCEYCLKYMRMEKTYRY 715
++ HE I +++ I++I IG +EI+ WYFSPYP E+ + +++C +C Y E+ ++
Sbjct: 172 VQNPHE-IARIRNINKICIGDHEIEPWYFSPYPKEFSEVDIVYICSFCFCYYGSERQFQR 230
Query: 716 HLSECTARQPQGNEIYRKGTIAIFE 790
H +CT + P GNEIYR I+ FE
Sbjct: 231 HREKCTLQHPPGNEIYRDDYISFFE 255
Score = 34.7 bits (76), Expect = 0.018
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 239 DESWHPAEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVS 355
D + AEI+ + T Y YVHY Y++RLDEW++
Sbjct: 32 DGEYRKAEILMIQKRTRGVVY--YVHYNDYNKRLDEWIT 68
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 75.8 bits (178), Expect = 8e-15
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = +2
Query: 560 TKVKYIDRIQIGKYEIDTWYFSPYPDEYGKQSKLWLCEYCLKYMRMEKTYRYHLSECTAR 739
T ++Y+ G Y I WY SPYP+EY L++CE CLKYM + + H +C+
Sbjct: 101 TSIRYL---YFGTYRIKPWYTSPYPEEYSCAKNLYICESCLKYMNSDHVLQRHKMKCSWS 157
Query: 740 QPQGNEIYRKGTIAIFE 790
P G+EIYR I+IFE
Sbjct: 158 YPPGDEIYRDKNISIFE 174
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 32.3 bits (70), Expect = 0.096
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +2
Query: 305 YYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDE 484
Y +HY G+ DEWV + R++ + + N K K + + KHD
Sbjct: 36 YLIHYKGWKNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQKPTSKKSASSTSKHDS 95
Query: 485 INHVQKTYAEMDPTTAALEKE-HEAITKVK 571
+ +T ++ + HE +++K
Sbjct: 96 TGVKTSGKRSRESSTVTVDGDSHELPSRIK 125
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 158 RSTDNEDSESVPEQPLDIGEHYLV------RRSDESWHPAEIIQSRYSTAESCYEYYVHY 319
+++ ++D S PL+ G Y+ + SDE + I+ SR S ++YY+ +
Sbjct: 140 KTSGSDDHNSQSPVPLNEGFEYIASSGSEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKW 199
Query: 320 VGYD 331
GYD
Sbjct: 200 EGYD 203
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 425 LLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYE 604
LL DK ++R+ + K EI H + E P + LE E K + D +QI +
Sbjct: 720 LLKDKY-TVVSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSR--DELQIQVEK 776
Query: 605 IDTWYFSPYPDEYG 646
++ FS + G
Sbjct: 777 VEEKIFSGFCKRIG 790
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 668 CEYCLKYMRMEKTYRYHLSECTARQPQGNEIYRKGTIAI 784
C Y K+ + YHL C AR + + Y K I I
Sbjct: 57 CPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKDINI 95
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 386 VCEQSNNNINCDHL--LTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAAL 538
V +Q+ + IN + LTD + + KR+ DE++ + ++ PT L
Sbjct: 262 VLQQALHEINIEFRSRLTDSERKALEEEDKREKDELDGYMRPVSQATPTNTDL 314
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 453 IFRPDLSVSRWSQFMLLFDCSHTSNLSDITRWRDTHSSSLLSYPT 319
I R +++ + WS+ M CSH N + + + D+ + L + T
Sbjct: 389 IIRNEVAYAGWSEVMPFILCSHDENYAWLRKTDDSKAVQLANPKT 433
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 666 NHNF-DCLPYSSGYGLKYQVSIS 601
NHN + LP S GYGL+ + SI+
Sbjct: 236 NHNLIEALPLSYGYGLREKESIA 258
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 644 GKQSKLWLCEYCLKYMRMEKTYRYHL-SECTARQ 742
G Q W C C K MR E ++ H SE RQ
Sbjct: 20 GLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQ 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,673
Number of Sequences: 5004
Number of extensions: 75696
Number of successful extensions: 306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -