Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I23
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   2.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   3.8  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      27   5.0  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   5.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    22   7.7  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   8.7  

>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 889 SVQVVQPLXAFTATCVPRGFVKTNTSPITALSGTM 785
           +V+VV+PL     T +  G V+ NT+  TA SGT+
Sbjct: 138 TVEVVEPLAGTVTTTIHSGSVEYNTTLATA-SGTV 171


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 548 VLSDLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSAL 688
           +L+D+Y   +  C N L LL ++ K  + E   ++      F  S+L
Sbjct: 581 LLTDIYNSDIRSCINSLQLLSLNNKRIDSETIKLLQPKSNSFSTSSL 627


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 693 QERLSLGGQTVINPWCTIGGVATTICQPNEYIVPD 797
           ++R S G   +++PW T+    + I  PN  I  D
Sbjct: 217 EKRASYGHSMIVDPWGTVIAQYSDISSPNGLIFAD 251


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 299 DLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFM 400
           ++K    K  QD   KLV  LQ   +  D+DQFM
Sbjct: 271 EVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFM 304


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 512  DPYMMGKIACANVLSDLYAMGVTECDNMLMLLGVSTKMTEKE 637
            DPY+M  +   + LS +Y    T      + L +ST + +K+
Sbjct: 1167 DPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQKQ 1208



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 272  ASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQ 394
            +S  L+  A ++  +  VP D   K+   L + Y   D+D+
Sbjct: 1110 SSHELSLVAFIREMAMPVPNDEFKKISTILARGYLALDEDE 1150


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 664 HYKRNNDVAF-LFSHFR*DTQQHEHIVALR-NTHRV*VAKNIGTCNLTHHIWVIH*WVKK 491
           ++  N D A  L    R   Q++E    L+ NTH   + K  G     HH WV H W  K
Sbjct: 544 YWPDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWV-HTWFDK 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,850,002
Number of Sequences: 5004
Number of extensions: 82553
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)