Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I22
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.9  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    26   6.7  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   6.7  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 247  PWF*HPPSTPLVWLARVHPWAVLK 176
            PW   P STP VWL++ +  +VL+
Sbjct: 1511 PWNTRPRSTPSVWLSQAYSPSVLQ 1534


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 466 NKIEGPPLPGITPNGRRVTVCRGIDQNLDAQQIIDTLKLALMIGDVRLTEEKEGVAGDIY 645
           N   GPP+    P GR ++      Q LDA+    +LKL ++  + R+     G    + 
Sbjct: 289 NADHGPPMVFPAPFGRELSKEEAYVQGLDAKTGA-SLKLTILNAEGRVWNLVAGGGASVV 347

Query: 646 VLDAV 660
             DAV
Sbjct: 348 YADAV 352


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 170 CLIFISNFNVFEYYSYLCHVLFTTIFTFSRQPSASSQMFN 51
           CL + +N N F YY     +      +F+ QP     +F+
Sbjct: 118 CLQYFTNLNSFLYYEAKVDLRMLICMSFALQPGTLKPLFS 157


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 151 FEMKIKQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQP 291
           FE+  K E    P G +W   R +L    K +D+ +  + E + K P
Sbjct: 260 FEILEKVEKAH-PDGPMWPLHRAKLLSMVKKQDEAIVVLEELMAKPP 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,267
Number of Sequences: 5004
Number of extensions: 59107
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)