Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_I22
(940 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 30 3.1
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 4.0
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 29 5.3
11_06_0377 - 22900042-22900452,22900527-22902236 29 7.1
11_04_0189 + 14678971-14679007,14679025-14679101,14679366-146794... 29 7.1
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612 29 7.1
04_04_0550 - 26187347-26188828 28 9.3
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 28 9.3
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 512 LPLGVIPGSGGPSILLVKISVNSGLVASRLVKNSGHAA---LIVKYMSSFRLHF 360
+P+G+IP S++ + V + AS L+ G A L V+++ S +HF
Sbjct: 332 IPVGIIPAGSDNSLVWTVLGVKDPISASLLIVKGGFTALDILSVEWIQSGLIHF 385
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 355 RKSCCRVGMSSAAPFPNRRVDAVVSST-IL**QPSPDPWF*HPPSTPLVWLARVHP 191
R CR + S P+ + R+ A SST +P+P P PPS P+ W P
Sbjct: 456 RPPTCRYALRSVFPYVHGRLPAAYSSTPSSTLRPAPPPA--APPSPPIGWCVGAPP 509
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 533 PLHTVTLLPLGVIPGSGGPSILLVKISVNSGLVASRLVKN 414
PL+ T +GVIP G PS+L + + N G + S +++
Sbjct: 425 PLYLGTATQIGVIPTEGIPSLLKIVLPPNFGGLPSLYIRD 464
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 475 EGPPLPGITPNGRRVTVCRGIDQNLDAQQI---IDTLKLALMIGDVRLTEEKEGVAGDIY 645
EG PLPG+ GR G+ + DA+++ +D + + +G + L +E+ +
Sbjct: 492 EGLPLPGLGVGGRARLYGEGLGREDDAERLEVAVDDAEGGVDLGALELQDEEPAGGKKVA 551
Query: 646 VLDAVXA 666
V AV A
Sbjct: 552 VSAAVAA 558
>11_04_0189 +
14678971-14679007,14679025-14679101,14679366-14679457,
14679808-14680134,14680515-14680530
Length = 182
Score = 28.7 bits (61), Expect = 7.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 307 WET--GPLMTFLRGSSFSLEKCKRKLDMYFTMRAACPEFFTKRD-ATRPELTEILTNKIE 477
WE GPL++FL E+ +R L + AA P ++ RD A P + + + +E
Sbjct: 70 WEDDLGPLLSFLPPDLAEEERLRRLL-LLPPNAAAAPRRYSGRDCAVGPPPSFLPPDLVE 128
Query: 478 GPPLPGITP 504
G L G TP
Sbjct: 129 GMALSGHTP 137
>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
Length = 648
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = +1
Query: 568 DTL-KLALMIGDVRLTEEK---EGVAGDIYVLDAVXAXHXP 678
DT+ L+L++G +RL +K +GVA + +L+++ A H P
Sbjct: 277 DTVASLSLLVGVMRLVRDKRHPDGVAAGLELLNSICAVHKP 317
>04_04_0550 - 26187347-26188828
Length = 493
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 527 HTVTLLPLGVIPGSGGPSILLVKISVNSGLVASRLVKNSGHAA 399
H + + +G + S G + ++ VNS LV SR+ + + H A
Sbjct: 21 HILPMTDIGCLLASHGAPVTIITTPVNSPLVQSRVDRATPHGA 63
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 253 DLAAIREWLKKQPHLPDDWETGPLMT 330
D+ +I EW QPHLP++ T ++T
Sbjct: 129 DVLSIEEWSLIQPHLPNETNTKIIVT 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,055
Number of Sequences: 37544
Number of extensions: 440778
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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