Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I22
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical ...    29   6.3  
AF016444-11|AAB65922.1|  203|Caenorhabditis elegans Hypothetical...    28   8.4  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 206 CQSSPVGCSKSSCLIFISNFNVFEYYSYL 120
           CQ S   CS    +I ++NF VF YY +L
Sbjct: 67  CQPSSHWCSIRCAIIIVNNFFVFMYYIFL 95


>AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.3 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 127 E*YSKTLKFEMKI-KQELLEQPTGELWQAIRVELKEDAKTKDQDLAAIREWLKKQPHLPD 303
           E + K   FE+ + K E+   PT E  Q   +   +D +    DL   R WL+K P   D
Sbjct: 178 EKWMKKCNFEIAVLKVEMAHYPT-ESSQIKHLPRCKDVRIGADDLETFRWWLQKVPEQLD 236

Query: 304 D 306
           D
Sbjct: 237 D 237


>AF016444-11|AAB65922.1|  203|Caenorhabditis elegans Hypothetical
           protein C36C5.15 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 283 KQPHLPDDWETGPLMTFLRGSSFSLEKCKRKLDMYFTMRAACPEFFTKRDATRPELTE 456
           K+    DDW+  P  T L   +  +EK K           AC  +F K D  + E+TE
Sbjct: 124 KKSQCYDDWDPIPNKTHLETDAAKIEKIKND---------ACKTYFGKDDCMKKEVTE 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,421
Number of Sequences: 27780
Number of extensions: 346888
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)