Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I22
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 285 FLQPFSNSSQVLILGFSILLQLHSYGLPEFT 193
           FLQPFSN+  +L++    ++ L  Y L  F+
Sbjct: 560 FLQPFSNTLWILVMVSVHVVALVLYLLDRFS 590


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 238 KTKDQDLAAIREW----LKKQPHLPDDWET 315
           + KD ++ A + W     + Q  +PD WET
Sbjct: 59  QAKDSNVLAAKVWNGQYARVQQSMPDGWET 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 563  ICWASKFWSIPLHTVTLLPLGVIPGSGGPSILLVKISVNSGLVASRLVKNSGHAALIVKY 384
            I W S   S     +T   + VIP  GG      KI+ +S  +   L K + ++  ++ +
Sbjct: 1100 ISWMSPPLSAANGVITGYKVIVIPSGGGIYTKDTKITSSSETILHGLKKYTNYSMQVLAF 1159

Query: 383  MS 378
             S
Sbjct: 1160 TS 1161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,816
Number of Sequences: 438
Number of extensions: 4427
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)