Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I20
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.10 
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    28   1.6  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.9  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   5.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.6  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   8.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   8.8  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 381 TKLLSHPLEPRRDRCVLLEQRLLSSERVIRKWIQ 280
           +KL+S P  P R RC LLE     +E     W+Q
Sbjct: 494 SKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQ 527


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 89  FGLVTQFFVVLISASAVLLKISSNLIWQQFKGLPV 193
           +GL  Q F  ++   +  L ++S LIW +  GLP+
Sbjct: 421 YGLKEQSFYTVLFGVSRTLGVASQLIWDRALGLPI 455


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 508 EDEIDGLKRLLTETLGQARRCQ 573
           ED ID LKRLL E L +  +CQ
Sbjct: 534 EDGIDFLKRLLHELLSRMGKCQ 555


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 8   FXYCLTTRAFLSYFCXLLLSMAXSXRLFGLVTQFFVVLISASAVLLKISSNLIWQQF--K 181
           F Y +  RAF SY C LL+++       G       + ++  A LL I ++ +      K
Sbjct: 451 FTYGINLRAFASYICGLLINVVGLAGAVGDKVPKAALTMNNIAYLLGIVTSFLSHLIICK 510

Query: 182 GLPVTNSG 205
             PVT  G
Sbjct: 511 IFPVTACG 518


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 220  LQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMR 396
            + H++S    + L++  SI N+ P     F  KEP F+K   V      + +E   + + 
Sbjct: 939  ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQFKKGDEVTGFVNNVSKECVWVSLT 993

Query: 397  RSVEG 411
             SV G
Sbjct: 994  PSVNG 998


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 508 EDEIDGLKRLLTETLGQARRCQTGMAH*RHNRELVATEFRTTAISYIPLTHKQ 666
           EDE+ GLK+L T         +T  A  R+   L   + R    + IP T KQ
Sbjct: 278 EDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLPQLRQIDATIIPKTSKQ 330


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 214 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 390
           P L+ +    P+  +  NRS+  +  ++YT  +   ++E +   PAR    + +EF ++ 
Sbjct: 77  PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136

Query: 391 MRRSVEG 411
           ++ S  G
Sbjct: 137 LQCSACG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,738
Number of Sequences: 5004
Number of extensions: 52041
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)