Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I20
         (935 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001403-1|AAH01403.1|  227|Homo sapiens nudix (nucleoside dipho...   187   4e-47
AJ001810-1|CAA05026.1|  227|Homo sapiens pre-mRNA cleavage facto...   187   4e-47
BX537360-1|CAD97606.1|  227|Homo sapiens hypothetical protein pr...   185   2e-46
CR456919-1|CAG33200.1|  227|Homo sapiens CPSF5 protein.               184   3e-46

>BC001403-1|AAH01403.1|  227|Homo sapiens nudix (nucleoside
           diphosphate linked moiety X)-type motif 21 protein.
          Length = 227

 Score =  187 bits (456), Expect = 4e-47
 Identities = 86/101 (85%), Positives = 95/101 (94%)
 Frame = +1

Query: 256 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 435
           LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 436 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGQ 558
           LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LG+
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGR 131



 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +2

Query: 554 GRQDGVKQEWLIEDTIGNWWRPNFEPPQY 640
           GRQDGV Q+W+I+D IGNWWRPNFEPPQY
Sbjct: 130 GRQDGVLQDWVIDDCIGNWWRPNFEPPQY 158


>AJ001810-1|CAA05026.1|  227|Homo sapiens pre-mRNA cleavage factor I
           25 kDa subunit protein.
          Length = 227

 Score =  187 bits (456), Expect = 4e-47
 Identities = 86/101 (85%), Positives = 95/101 (94%)
 Frame = +1

Query: 256 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 435
           LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 436 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGQ 558
           LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LG+
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGR 131



 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +2

Query: 554 GRQDGVKQEWLIEDTIGNWWRPNFEPPQY 640
           GRQDGV Q+W+I+D IGNWWRPNFEPPQY
Sbjct: 130 GRQDGVLQDWVIDDCIGNWWRPNFEPPQY 158


>BX537360-1|CAD97606.1|  227|Homo sapiens hypothetical protein
           protein.
          Length = 227

 Score =  185 bits (451), Expect = 2e-46
 Identities = 85/101 (84%), Positives = 95/101 (94%)
 Frame = +1

Query: 256 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 435
           LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 436 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGQ 558
           LPHVLLLQLGT FFKLPGGEL+PGEDE++GLKRL+TE LG+
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELDPGEDEVEGLKRLMTEILGR 131



 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +2

Query: 554 GRQDGVKQEWLIEDTIGNWWRPNFEPPQY 640
           GRQDGV Q+W+I+D IGNWWRPNFEPPQY
Sbjct: 130 GRQDGVLQDWVIDDCIGNWWRPNFEPPQY 158


>CR456919-1|CAG33200.1|  227|Homo sapiens CPSF5 protein.
          Length = 227

 Score =  184 bits (449), Expect = 3e-46
 Identities = 85/101 (84%), Positives = 94/101 (93%)
 Frame = +1

Query: 256 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 435
           LTL R+INLYPLTNYTFGTKEPL+EK +SV ARFQRMREEF KIGMRR+VEGVL+VHEH 
Sbjct: 31  LTLERTINLYPLTNYTFGTKEPLYEKGSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90

Query: 436 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGQ 558
           LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LG+
Sbjct: 91  LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGR 131



 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +2

Query: 554 GRQDGVKQEWLIEDTIGNWWRPNFEPPQY 640
           GRQDGV Q+W+I+D IGNWWRPNFEPPQY
Sbjct: 130 GRQDGVLQDWVIDDCIGNWWRPNFEPPQY 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,010,771
Number of Sequences: 237096
Number of extensions: 1977748
Number of successful extensions: 5691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5676
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)