Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I20
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical pr...   153   2e-37
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    29   3.6  

>Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical
           protein F43G9.5 protein.
          Length = 227

 Score =  153 bits (371), Expect = 2e-37
 Identities = 69/98 (70%), Positives = 83/98 (84%)
 Frame = +1

Query: 265 NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 444
           NR+IN+YPLTNYTFGTK+   EKD SVP RF+RM++E+  +GMRRSVE VL+VHEH LPH
Sbjct: 31  NRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLPH 90

Query: 445 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGQ 558
           +LLLQ+GT F+KLPGGEL  GEDEI G+ RLL ETLG+
Sbjct: 91  ILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGR 128



 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = +2

Query: 554 GRQDGVKQEWLIEDTIGNWWRPNFEPPQY 640
           GR DG   EW IED IGNWWRPNF+PP+Y
Sbjct: 127 GRTDGETNEWTIEDEIGNWWRPNFDPPRY 155


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 157 KSHLAAVQGPPGNKQWPARPGLQHQISQNPSMNL 258
           KS    + GPPG   WP  PG++    +  S  L
Sbjct: 137 KSGYKGIDGPPGIPGWPGEPGVRGMNGERGSTGL 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,605
Number of Sequences: 27780
Number of extensions: 308903
Number of successful extensions: 1001
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)