Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_I19
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 31 0.94
07_01_0080 + 587674-588510 31 1.6
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.9
03_03_0278 - 16126803-16129049 29 3.8
09_03_0074 + 12103454-12103613,12104102-12104183,12105145-121052... 29 6.6
07_03_0600 + 19866757-19867218,19867920-19868429 29 6.6
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 29 6.6
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 29 6.6
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 6.6
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 8.7
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 31.5 bits (68), Expect = 0.94
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 366 PPPXXPXEXXGAPPPPXRP 422
PPP P + G PPPP RP
Sbjct: 625 PPPPPPGKPGGPPPPPPRP 643
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 357 QRAPPPXXPXEXXGAPPPPXRP 422
+R PPP P G+PPPP P
Sbjct: 89 RRPPPPPPPPPSSGSPPPPPPP 110
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +3
Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLPEXXXVXXVXAAPPXXXXLAXPXXXXXGX 545
PPP P APPPP P G P PP P G
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 546 PTASKPXP 569
P P
Sbjct: 374 KGGPPPPP 381
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 363 APPPXXPXEXXGAPPPPXRPTXXXYXXVAXG 455
APPP P G PPPP P +A G
Sbjct: 928 APPPPPPPGKPGGPPPPPPPPGSLPRNLAGG 958
>03_03_0278 - 16126803-16129049
Length = 748
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 357 QRAPPPXXPXEXXGAPPPPXRPT 425
QR PPP P APPP PT
Sbjct: 184 QRPPPPPPPPRQAPAPPPAKPPT 206
>09_03_0074 +
12103454-12103613,12104102-12104183,12105145-12105200,
12105671-12106048,12106402-12106565
Length = 279
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 555 RRWGXRCXYXGAXPVXXXGGGRXLXGRRXXAPVTPXRP 442
+R G RC A P GGGR G R + TP P
Sbjct: 154 QRRGRRCRAAAALPPVGSGGGRAPPGSRRSSCRTPTTP 191
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = +3
Query: 363 APPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLPEXXXVXXVXAAPPXXXXLAXPXXXXXG 542
APPP P G PPPP A P+ + APP P G
Sbjct: 61 APPPQQPPAMWGQPPPPP-------PQYAPPPPQQFQLPHQQYAPPPQHYAPPPPQQQYG 113
Query: 543 XPTASKPXP 569
A P P
Sbjct: 114 AQMAGGPAP 122
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 345 HXXXQRAPPPXXPXEXXGAPPPPXRP 422
H PPP P + PPPP +P
Sbjct: 49 HHALPHPPPPPPPPQPAKEPPPPTKP 74
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 366 PPPXXPXEXXGAPPPPXRP 422
PPP P APPPP +P
Sbjct: 36 PPPSRPEPDQAAPPPPPQP 54
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 366 PPPXXPXEXXGAPPPPXRPT 425
PPP P PPPP RP+
Sbjct: 40 PPPPSPVPSPAPPPPPHRPS 59
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 360 RAPPPXXPXEXXGAPPPPXRP 422
R PPP P PPPP +P
Sbjct: 613 RPPPPAMPGSSKTRPPPPLKP 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,930
Number of Sequences: 37544
Number of extensions: 289818
Number of successful extensions: 1098
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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