Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I19
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    26   0.37 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     31   0.84 
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    31   0.84 
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    31   0.84 
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 25.8 bits (54), Expect(2) = 0.37
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +2

Query: 404 PPPXPXDLIXIXPGRXGVTGAXXRLPXXCRPPP*XXTGXAP 526
           PPP P   I   PG  G+            PPP    G  P
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106



 Score = 25.4 bits (53), Expect(2) = 0.37
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 629 PXPPXXXXIXPXXPPPXGXXXXXXPP 706
           P PP      P  PPP G      PP
Sbjct: 105 PPPPPMFGAPPPPPPPSGLGVAPQPP 130


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P    GAPPPP  P       VA   P
Sbjct: 796 PPPPLPPISSGAPPPPPPPPPGGLMHVAASAP 827


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P    GAPPPP  P       VA   P
Sbjct: 796 PPPPLPPISSGAPPPPPPPPPGGLMHVAASAP 827


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P    GAPPPP  P        + G P
Sbjct: 235 PPPPLPPVGAGAPPPPPPPPPPAQLMASSGTP 266


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P    GAPPPP  P        + G P
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPPAQLMASSGTP 252


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P    GAPPPP  P        + G P
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPPAQLMASSGTP 252


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRP 422
           PPP  P    GAPPPP  P
Sbjct: 564 PPPPLPQNLSGAPPPPPPP 582



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRP 422
           PPP  P    G PPPP  P
Sbjct: 577 PPPPPPPPMLGGPPPPPPP 595


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +1

Query: 364 PPRRKXQXXXXGXPPPRPXRPXXXIXXSXRGYRSXXXSXX*XPPPP 501
           PP         G PPP P  P   +  +  G +S        PPPP
Sbjct: 538 PPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPP 583


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 366 PPPXXPXEXXGAPPPPXRPTXXXYXXVAXGLP 461
           PPP  P +   APPPP          V  G P
Sbjct: 370 PPPDTPHKKRAAPPPPQEVNAHRQSPVVNGKP 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,646
Number of Sequences: 27780
Number of extensions: 190279
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)