Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I18
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.70 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPP          PPPP        PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           P PP         PPPP        PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 453 PPPXGGGGXXPPPP 494
           PPP G  G  PPPP
Sbjct: 765 PPPPGVAGAGPPPP 778


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP         PPPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 599 PPPPXFFFXXXXXPPPPXXXXXXXXPPPPP 688
           PPPP         PPPP        PPPPP
Sbjct: 9   PPPP---------PPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 636 PPPPXXXXXXPXXPPPP 686
           PPPP      P  PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,444
Number of Sequences: 5004
Number of extensions: 26639
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)