Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I17
         (1119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.89 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 600 PPXXPPPPRXXGXEKKKKKKXXXXGG 523
           PP  PPPP   G  KK+K K     G
Sbjct: 20  PPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 602 PPPXPPPPPXGXGXKKKKKK 543
           PP  PPPPP     KK+K K
Sbjct: 20  PPSQPPPPPPPGYVKKRKNK 39



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 602 PPPXPPPPPXGXGXKKKKKKXXXXG 528
           P   PPPPP G   K+K K     G
Sbjct: 21  PSQPPPPPPPGYVKKRKNKTPAQSG 45


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 668 PPPPXXXGGGXXXXXXXXXXXXPPPXPPPPP 576
           PP P   G              PPP PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -2

Query: 668 PPPPXXXGGGXXXXXXXXXXXXPPPXPPPPPXGXGXKK 555
           PPPP   G G            PPP PPPP    G  +
Sbjct: 765 PPPPGVAGAGP-----------PPPPPPPPAVSAGGSR 791


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -2

Query: 686 PXXXXXPPPPXXXGGGXXXXXXXXXXXXPPPXPPPPP 576
           P     PPP                   PPP PPPPP
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 602 PPPXPPPPP 576
           PPP PPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -2

Query: 668 PPPPXXXGGGXXXXXXXXXXXXPPPXPPPP 579
           PPPP     G             PP PPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 602 PPPXPPPPP 576
           PPP PPPPP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,639
Number of Sequences: 5004
Number of extensions: 21621
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)