Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I15
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.7  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
 Frame = +1

Query: 334 QVNLDVQHFSPEEISVKTADG-----YVIVEGKHEERQDEHGYISRQFTRRYALPENCNP 498
           Q   +   +S   + ++T  G     Y       +E  +EH    ++F  R A  E+ +P
Sbjct: 363 QYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEH-LTPKRFHSRAASKEDLSP 421

Query: 499 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVR-KEIKEPTAEVESNETKQ*LS 675
            ++       G   +  P  P    +     ++ +G    +E+K P        +     
Sbjct: 422 SSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHS--- 478

Query: 676 ERCESKKCSXC*FILHSSCVLVRLIA 753
            RC  +        +H SC+ VR IA
Sbjct: 479 -RCPPE--------IHKSCICVRFIA 495


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
 Frame = +1

Query: 334 QVNLDVQHFSPEEISVKTADG-----YVIVEGKHEERQDEHGYISRQFTRRYALPENCNP 498
           Q   +   +S   + ++T  G     Y       +E  +EH    ++F  R A  E+ +P
Sbjct: 363 QYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEH-LTPKRFHSRAASKEDLSP 421

Query: 499 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVR-KEIKEPTAEVESNETKQ*LS 675
            ++       G   +  P  P    +     ++ +G    +E+K P        +     
Sbjct: 422 SSLADGARFGGSCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHS--- 478

Query: 676 ERCESKKCSXC*FILHSSCVLVRLIA 753
            RC  +        +H SC+ VR IA
Sbjct: 479 -RCPPE--------IHKSCICVRFIA 495


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
 Frame = +3

Query: 129 KNVSAAIHPGIPTEPPSRSGLRTGAYSGRSPDGRHHAN---------DVQRLLPAVEADG 281
           + V A++ P  P  P   S     AY+    D   H           D + LLP V   G
Sbjct: 172 QTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGG 231

Query: 282 DGQ*RRRFHHHLE 320
           + +   R   HLE
Sbjct: 232 ESEALARLERHLE 244


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 657 FVALNFRSGLLNLLPDRAGLSDGNSSL 577
           FV +N+R G+L  L     +  GN  L
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGNMGL 179


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 657 FVALNFRSGLLNLLPDRAGLSDGNSSL 577
           FV +N+R G+L  L     +  GN  L
Sbjct: 24  FVTINYRLGILGFLSTEDEVVPGNMGL 50


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 657 FVALNFRSGLLNLLPDRAGLSDGNSSL 577
           FV +N+R G+L  L     +  GN  L
Sbjct: 153 FVTINYRLGILGFLSTEDEVVPGNMGL 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,470
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)