Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I10
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...   149   7e-35

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score =  149 bits (362), Expect = 7e-35
 Identities = 81/159 (50%), Positives = 90/159 (56%)
 Frame = +2

Query: 266 SRFEHNRPXXGXGXXRPSNXKATSQSNQPAEKSNXQXQXXXQPKQXSSXPQXXMETTXVP 445
           SRFEHNRP  G G  RPSN KATSQSNQPAEKSN Q Q   QPKQ SS PQ  METT VP
Sbjct: 37  SRFEHNRPQQGQGGQRPSNEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVP 96

Query: 446 QSTXSXXXXXXXXXXXGPKYHTQXXXQMQQRLXXQPVNAPARSEPQENTDEPXFEPFTXT 625
           QST +             +   Q   QMQQ+   +PVNAPA+SEPQENTD+P FEP    
Sbjct: 97  QST-NQQQQSQQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPKFEPNNQN 155

Query: 626 XXXSTXPSXXAXIXRIXMXTSGGXN*XXGSWXXXGGPGN 742
              +   +      +      GG N   GSW   GGPGN
Sbjct: 156 QQINQHNNLNTQQQKNINGNFGGPNKQGGSWNHGGGPGN 194


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,928,731
Number of Sequences: 1657284
Number of extensions: 6402735
Number of successful extensions: 8724
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8708
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)