Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_I09
         (967 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   9.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 451 TTSLVTYNIFIAVYLHVV*VKFIVICQSILVLGMAGR-VASKFTCKLIANTXPLL*NVFC 627
           T  ++ Y   I+ +  ++   +++   ++++L +    + S+ T ++IA +  L+ ++ C
Sbjct: 238 TYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNLICHILC 297

Query: 628 FEFLFWE 648
              L W+
Sbjct: 298 MSDLHWQ 304


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 67  RSGTVPGYRVQRDRPNMWLGSRG 135
           R    P Y+V++  P  +LG+RG
Sbjct: 291 RGNNFPVYQVEKRSPFRYLGARG 313


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 182  PEAERRRWTPPAVAPGPRD 126
            P+ +   WTP  +A  P D
Sbjct: 1147 PDTDSENWTPKMMAVEPTD 1165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,249
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)